Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01400 ATGGCCATGGAAGCTGAGGCTACAACAACTCCACAGTTGGCACTTGCTGATACAGATATCAAGTGGGACAGGTTGGATAAGAGCAAGTTTCACATCATTGGTGCTATACTTTTCACTGCACAATCTGCGTTGCTTCATCCAACGGCAGTGGTGAAGACAAGGATGCAAGTTGCTGGTTCTGGACTCTCTCACATGACGGGAATGTCAGTGTTCACTCACATTTTGCGTAGTGATGGTATTCCTGGAATCTTTAGAGGTTTTGGAACTTCTGCTATTGGATCAATGCCTGGTAGGGTCTTAGCTCTCACATCTCTCGAGATGTCAAAGGACATGATGTTGAAACACACTCAAGGTAGTGATATTCCAGAAGCTTCACGTATTGCACTTGCAAATGGGGTGGCTGGCATGGTTTCAAACCTTGTATCTTGTGCATACTTTGTGCCTTTGGATGTGACCTGCCAGAGGTTAATGGTACAAGGTCTCCCCGGAACTGCTTGTTGTAGAGGACCATTTGATGTTATACGTACAGTTATGAAGGCTGAGGGTATTCGTGGCTTGTATAGAGGTTTTGGATTAACAGCTGTAACCCAGTCTCCAGCATCTGCACTTTGGTGGGGTTCATATGGTGCAGCACAACACATAATTTGGAGGAGTTTGGGCTACAAAGATGATATGGAGAACAAACCTTCACATGTGGAAATGGTGACAGTTCAGGCTACTGCTGGGATGGTGGCTGGTGCTTGTTCCTCTGTTATCACTACTCCCATAGATACTGTAAAAACACGTCTTCAGGTTATGGACAACTATGGCTCTGGAAGACCATCAGTACTAAAGACAGCAAAGACTCTCCTCAAGGAAGATGGATGGTGGGGATTTTATAGGGGGTTTGGACCAAGATTTTTAAATATGTCACTTTATGGAACAACGATGATTGTTACTTATGAACTGATAAAGAGATTATCAGTACAGCCAAATCTGAGGTCTTTTTCTTAA 993 0.4391 MAMEAEATTTPQLALADTDIKWDRLDKSKFHIIGAILFTAQSALLHPTAVVKTRMQVAGSGLSHMTGMSVFTHILRSDGIPGIFRGFGTSAIGSMPGRVLALTSLEMSKDMMLKHTQGSDIPEASRIALANGVAGMVSNLVSCAYFVPLDVTCQRLMVQGLPGTACCRGPFDVIRTVMKAEGIRGLYRGFGLTAVTQSPASALWWGSYGAAQHIIWRSLGYKDDMENKPSHVEMVTVQATAGMVAGACSSVITTPIDTVKTRLQVMDNYGSGRPSVLKTAKTLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQPNLRSFS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01400 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 320 IPR018108 -
Rops11g01400 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Rops11g01400 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 28 111 IPR018108 -
Rops11g01400 330 SUPERFAMILY Mitochondrial carrier 23 316 IPR023395 -
Rops11g01400 330 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 323 - -
Rops11g01400 330 Gene3D Mitochondrial carrier domain 31 326 IPR023395 -
Rops11g01400 330 Pfam Mitochondrial carrier protein 237 321 IPR018108 -
Rops11g01400 330 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Rops11g01400 330 Pfam Mitochondrial carrier protein 129 216 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01400 Rops-Chr11 20743640 20747011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01400 17 320 Chloroplast and Mitochondria Gene Families AT5G15640 51.307 5.84e-108 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01400 K15121 - gmx:112997745 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01400 11 20743640 20747011 Rops11g01400 11 20743640 20747011 ECH