Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01391 ATGTGCAGCATCTTTGTTCCAATCATGGACAATTACCAAGGTGATTTAACAGACATATTCCGAGCTAGTGGTGGAGCATATGGAAGTAGTAGCAGTAGCAGCAGCAACACTTCATCATCAGCTGAAGCTGCAACACATCATCATGATCAGTGGCATCATCATCATCATCATCACTTTTCTTCTGATCCCATGAGTTTCTCTTCTGACCCCAGAATAGGCAACTACTTTGGTGATCCATTCTCAACCATGAGAGATCCCTTCTTGCAAGAGCTTGATATGCCCTCAGGTTCTTCCTATTTCAATATCAGTACTACCTCTGGGGGTTTGGAACAAATAGCTGCTACTACAGGTTTTGGTGTTGGTGTTGGTGGTAATAATTCAAATACTACTACTACTTCTTCTGTTTTTGCACACAAGGTTGTTGAAGATGACATGAGAAGGTCTTGTAAAAACATATTCTCAAACATGATTCAGATCTCTCCAAATGCAAAGTTACCCTATGATTCATCAGCTATGGCAGCTTCCCCGAGGGCAATTAAACCTTCTGCTGTGGTTTCACCAAACATGATTAATAATGCAAACACTTCCAAGGATTGCCTTGTGGACAACTCAGGAGGAGTGCAGATCTCATCTCCACGGAATCCGGGTCCTAAACGAAGGAAGAACCAGGCCAAAAAGGTGGTTTGTATTCCTGCACCTGCATCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCTATTAAAGGTTCACCTTATCCCAGGGGTTATTATAGATGCAGCAGTTCAAAGGGTTGTTCTGCAAGGAAGCAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTTATTACTTACACTTCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCCCTTGCTGGTTCAACAAGATCACAGCCATCCAAGAACAATGCTGTTTCAAGGAGTTCAGAAAAGGGCACATCAAAGCGAAAGGAAGAGCAACATGAGAGCAATAGTGAGGGAAATAATTCACCAGTTGTTGCAGCTGTGAAGGAAGAGATGGAAGACATGGAGAAGCAGCTTGAGATGGATGAAGGAGAATTCAGTGATGGACTCCCTTACAAGCCATCAATGATGAATGAGAGTAACCAATCTGAGGACTTCTTTGCAGAATTGGGAGAAATAGAAGCTGACCCACTAAGCCTTTTGTTCACACAAGGTTTTGGTGCAGCTGAAGATCAAAGGGGATCCAAGGCCTTAGATCCATTCCATCTATTTGACTGGTCAGGAGACACCAACAACAATAACACCAACTCATTTGAAGAACATAACAACAAGAACTAG 1368 0.4298 MCSIFVPIMDNYQGDLTDIFRASGGAYGSSSSSSSNTSSSAEAATHHHDQWHHHHHHHFSSDPMSFSSDPRIGNYFGDPFSTMRDPFLQELDMPSGSSYFNISTTSGGLEQIAATTGFGVGVGGNNSNTTTTSSVFAHKVVEDDMRRSCKNIFSNMIQISPNAKLPYDSSAMAASPRAIKPSAVVSPNMINNANTSKDCLVDNSGGVQISSPRNPGPKRRKNQAKKVVCIPAPASANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNAVSRSSEKGTSKRKEEQHESNSEGNNSPVVAAVKEEMEDMEKQLEMDEGEFSDGLPYKPSMMNESNQSEDFFAELGEIEADPLSLLFTQGFGAAEDQRGSKALDPFHLFDWSGDTNNNNTNSFEEHNNKN* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01391 455 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01391 455 Coils Coil 355 375 - -
Rops11g01391 455 MobiDBLite consensus disorder prediction 290 331 - -
Rops11g01391 455 Pfam WRKY DNA -binding domain 248 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01391 455 Gene3D WRKY domain 220 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g01391 455 MobiDBLite consensus disorder prediction 332 346 - -
Rops11g01391 455 MobiDBLite consensus disorder prediction 30 44 - -
Rops11g01391 455 MobiDBLite consensus disorder prediction 436 455 - -
Rops11g01391 455 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01391 455 SUPERFAMILY WRKY DNA-binding domain 244 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g01391 455 MobiDBLite consensus disorder prediction 30 65 - -
Rops11g01391 455 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 14 410 IPR044810 GO:0003700
Rops11g01391 455 MobiDBLite consensus disorder prediction 271 354 - -
Rops11g01391 455 FunFam probable WRKY transcription factor 14 220 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01391 Rops-Chr11 20607851 20611266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01391 1 444 WRKY Transcription Factor Family AT1G30650 43.629 5.85e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops11g01391 WRKY 2.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01391 - - aprc:113852911 603.594