Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01379 ATGGGTGCTCCTAAGCAGAAATGGACAGCAGAAGAGGAAGCAGCACTTAAAGCTGGAGTGGTCAAACATGGGGTTGGTAAATGGCGTACAATTCTAAAGGATCCAGAGTTTAGTGGTGTCTTATATCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGCTCCAGGGAAAAGTCTAGGTTAGCTGTCAGAAGGGTGCATCAGGCCCCAAAACATGATGACAACTCTATGGCGGTCACTCCTGTTGTTCCGAGTGATGAAGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCAAGAGATATGGTGCAGATTCCTGGTCCAAAAAGGTCTATTGTAAGATTGGATAACCTTATAATGGAAGCAATAACTAGCTTGAATGAGCCTGGTGGTTCTAACAAGACAACTATTGCAGCTTTCATAGAGGACCAATATTGGGCACCGCCAGACTTCAAAAGGTTGTTGTCAGCGAAATTGAAGTTTTTAACAGCTAGTGGAAAACTGATCAAGGTAAAACGCAGGTATAGGATGGCACCTCCTCCAGCATATTCAGACAGAAGAAGAAACTCATCCATGTTATTGTTGGATGGCAGGCAGAAAGCATCCATGAAAGTTGACAAGGATGAGACCAACATCCTTACAAAGTCTCAGATAGATTTAGAATTAGCAAAGATAAGGTCCATGACTGCGCAAGAGGCAGCTGCATATGCTGCTCGAGCAGTTGCTGAAGCAGAAGCCGCCATAGCAGAAGCTGAAGAGGCAGCAAAGGAGGCAGAGGCAGCAGAAGCTGATGCGGAGGCCGCAGAAGCTTTTGCTGAAGCTGCAAGGAAAACACTGAAAGGGAGAAACACCCCAAAGTCGATGACTCATTCTTGA 903 0.4496 MGAPKQKWTAEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHQAPKHDDNSMAVTPVVPSDEEIVDVKPLQVSRDMVQIPGPKRSIVRLDNLIMEAITSLNEPGGSNKTTIAAFIEDQYWAPPDFKRLLSAKLKFLTASGKLIKVKRRYRMAPPPAYSDRRRNSSMLLLDGRQKASMKVDKDETNILTKSQIDLELAKIRSMTAQEAAAYAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAEAFAEAARKTLKGRNTPKSMTHS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01379 300 FunFam Telomere repeat-binding factor 1 118 198 - -
Rops11g01379 300 FunFam Telomere repeat-binding factor 1 2 58 - -
Rops11g01379 300 SMART sant 4 59 IPR001005 -
Rops11g01379 300 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops11g01379 300 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Rops11g01379 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Rops11g01379 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops11g01379 300 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops11g01379 300 Coils Coil 243 287 - -
Rops11g01379 300 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
Rops11g01379 300 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Rops11g01379 300 Gene3D - 118 197 IPR036388 -
Rops11g01379 300 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Rops11g01379 300 CDD SANT_TRF 6 56 - -
Rops11g01379 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Rops11g01379 300 Gene3D - 2 59 - -
Rops11g01379 300 FunFam Telomere repeat-binding factor 1 8 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01379 Rops-Chr11 20451781 20466626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01379 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 67.219 4.59e-108 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops11g01379 Linker_histone 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01379 K09422 - gmx:100780698 422.935