Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01376 ATGGGTAGCCGACGACACCAAAAGCCACACAGGGCCATGGAAGACTATGTGCTAGAAAATGAAGAACTTGCTGTTGATGAACCCATTTCAAATGATAATGGTAGAGAGACTGTTGGTTCCACAGAAGATGTTAGGGATAGATCCATTTTTGTTATGATTTCTGACCCTGACGTGTTGGATTGCTGCATTTGTTTAGAACCCTTAAGAGTTCCCGTGTTCCAGTGCGAAAATGGTCACATTGCTTGCTCCACCTGCTGTACTAATCTCAAGCAGAAGTGTGCCATATGCTTAATGCCTATTGGCTCCATCCGTTGCAGAGCCATAGAGAATGTCGTGCAATCTATCAAAATATCATGTCAGAATAAAAAATATGGTTGCCAAATGACAACAAGTTACAATGAGAAGGATGAGCATGAAAAGAAATGCATCTATGTACCATGTTACTGCCCTCATTCAGGTTGTGACTTTGTTGCCTCATCCAAATTGTTATCCATGCACATCAGCCTTAAACATCGGGCTTCTCGAATCCAGTTTTCATATGATCACTCTTTCTTTGTCTCCTTGAAGTCTGACGATGTGGCCATTATTCTTCAAGAGCAAACTGATGGCAAATTGTTTATTCTCAACAGTAATGCTGTGCAATTGGGGAATGTGGTCAATATTAGTTGTATTGGTCCTAACTCTTCTAAGCCAGGGTATCATTATGATATCTTGGCTAGATCCCAGGGACGCAGTCTGAAGTTACAGTCTTTTACCAATAACATTCAAAGGGGCACTTCATCTACTCTTTCATCTGAGTTCCTCGTGATTCCATTGAATTATTTTGGTTCTTCTGAATCTCTCAAACTGGAGATTTGTATCAGATACAGATACAGTGCTACACAATCTGCTGAATGCAAACGTCCATAA 909 0.407 MGSRRHQKPHRAMEDYVLENEELAVDEPISNDNGRETVGSTEDVRDRSIFVMISDPDVLDCCICLEPLRVPVFQCENGHIACSTCCTNLKQKCAICLMPIGSIRCRAIENVVQSIKISCQNKKYGCQMTTSYNEKDEHEKKCIYVPCYCPHSGCDFVASSKLLSMHISLKHRASRIQFSYDHSFFVSLKSDDVAIILQEQTDGKLFILNSNAVQLGNVVNISCIGPNSSKPGYHYDILARSQGRSLKLQSFTNNIQRGTSSTLSSEFLVIPLNYFGSSESLKLEICIRYRYSATQSAECKRP* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01376 302 CDD RING-HC_SIAHs 59 96 - -
Rops11g01376 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 27 288 IPR044286 -
Rops11g01376 302 Pfam Seven in absentia protein family 103 270 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops11g01376 302 SUPERFAMILY TRAF domain-like 114 288 - -
Rops11g01376 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 167 IPR013083 -
Rops11g01376 302 ProSiteProfiles Zinc finger SIAH-type profile. 114 172 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01376 Rops-Chr11 20392298 20395132 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01376 57 288 C3H Transcription Factor Family AT2G41980 26.613 3.26e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01376 K04506 - mtr:11432566 325.094