Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01374 ATGGAAGTGTATGTGCTAGAAAATGAAGAACTTGCTGTTGATGAACCCATTTCAAATGATAATGGTAGAGAGACTGTTGGTTCCACAGAAGATGTTAGGGATAGATCCATTTTTGTTATGATTTCTGACCCTGACGTGTTGGATTGCTGCATTTGTTTTGAACCCTTAAGAGTTCCCGTGTTCCAGTGCGAAAATGGTCACATTGCTTGCTCTACCTGCTGTACTAATCTCAAGCAGAAGTGTGCCATATGCTTAATGCCTATTGGCTCCATCCGTTGCAGAGCCATAGAGAATGTCGTGCAATCTATCAAAATATCATGTCAGAATAAAAAATATGGTTGCCAAATGACAAGAAGTTACAATGAGAAGGATGAGCATGAAAAGAAATGCATCTATGTACCATGTTACTGCCCTCATTCAGGTTGTGACTTTGTTGCCTCATCCAAATTGTTATCCATGCACATCAGCCTTAAACACCGGGCTTCTCGAATCCAGTTTTCATATGATCACTCTTTCTTTGTCTCCTTGAAGTCTGACGATGTGGCCATTATTCTTCAAGAGCAAACTGATGGCAAATTGTTTATTCTCAACAATAATGCTGTGCAATTGGGGAATGTGGTCAATATTAGTTGTATTGGTCCTAACTCTTCTAAGCCAGGGTATCATTATGATATCTTGGCTAGATCCCAGGGACGCAGTCTGAAGTTACAGTCTTTTACCAATAACATTCAAAGGGGCACTTCATCTACTCTTTCATCTGAGTTCCTCGTGATTCCATTGAATTATTTTGGTTCTTCTGAATCTCTCAAACTGGAGATTTGTATCAGATACAGATACAGTGCTACACAATCTGCTGACTGCAAACGTCCATAG 873 0.3998 MEVYVLENEELAVDEPISNDNGRETVGSTEDVRDRSIFVMISDPDVLDCCICFEPLRVPVFQCENGHIACSTCCTNLKQKCAICLMPIGSIRCRAIENVVQSIKISCQNKKYGCQMTRSYNEKDEHEKKCIYVPCYCPHSGCDFVASSKLLSMHISLKHRASRIQFSYDHSFFVSLKSDDVAIILQEQTDGKLFILNNNAVQLGNVVNISCIGPNSSKPGYHYDILARSQGRSLKLQSFTNNIQRGTSSTLSSEFLVIPLNYFGSSESLKLEICIRYRYSATQSADCKRP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01374 290 ProSiteProfiles Zinc finger SIAH-type profile. 102 160 IPR013010 GO:0008270
Rops11g01374 290 CDD RING-HC_SIAHs 47 84 - -
Rops11g01374 290 SUPERFAMILY TRAF domain-like 102 276 - -
Rops11g01374 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 155 IPR013083 -
Rops11g01374 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 25 276 IPR044286 -
Rops11g01374 290 Pfam Seven in absentia protein family 91 258 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01374 Rops-Chr11 20343038 20346010 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01374 45 276 C3H Transcription Factor Family AT2G41980 26.613 4.82e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01374 K04506 - mtr:11432566 329.331