Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01373 ATGATTCTGAAATTTGTTCATATCATCATCATTTCGATGATATATCCGCAAGCATCTGCACAATATTCTTCAATCATAGCACGATCTGGTTGTAATCCGACATGTGGAAATGTTGACATCCCTTTCCCGTTCGGAATGAAGGATCCCAAATGCTATGCAGACAAGTGGTTTGAAATAGAATGCAAAAACACTACTCAAGGTAAGAAACCTTACCTCAAGCATATAAATTTGGAGGTAAGAGACATTGATATCTATAGCTGGGTCACCATCATGAATCCGATTTACCGGAGGAACTGCAAAAGCAAAGATGCTGGGTCAGTCGTAGATCTGAGAGGAGGCCCTTTCGTGTATTCCCAGGATGCAAACAAATTTTTGGCCGTAGGTTGCAATAAGATTGCTTTTTTGGTGTCAAATGGCTCACAAGTCAGTGGTTGTGTGTCCATTTGTGATGACAAAGAAGATGTTGACGATGATATGTACATACTAACTTGTAATGGCAAGTACTGCTGTGAGACTTCTCTGCCGTCGTATCTTTCCGAATATAACGCAACAATTCAAGATCTAAGTAAGGATCATGTGAGCGATCAATGCAGATGGGCGCTGATTTTTCAATCATATTCTTATTATCAGAACGACGACTATACGAGTATTGATTTACTAAAGGATGTAAAACATGCTCCTGCGGTGCTTGAGTGGGAGATTCCAAACAATTCGACCCTGAAACTCCCAATAGCTGAATTTTCCTACTGTAATGCCACTAATTTTACATCTTCACTAAACACAAACTCAGGCTCGAGATGTAGCTGCAATGATGGCTTTTATGGCAATCCCTACGTCACTGGAGGCTGTAAAGTTTCAGATCCAGTCCCGTCATGGGTGAACGATTACAAAAACAAAAGTCGAGCGAAGTGGGCCATAGTTGGAGTTTGTTCAAGTATTGGATCCATCATTTTACTTCTTGGTCTCTGGCGGTTGTTTAAAGTTGTAAGGAGAAAACTAGTACAGAGACGCAAAGAAAAATTCTTCAAACGAAATGGAGGATTGTTGTTAGAACAAAGATTTTCTTCTGGTGAAGTTAATGATGACAAAACAAAACTTTTCAACCTAAAGGATTTAAAGAAGGCCACAGATCACTTTAATGTGAACAGAGTACTGGGAAAGGGAGGTCAAGGTACCGTTTACAAAGGCATGCTAGCAGATGGAAAAATTGTTGCAGTGAAAAAGTTTAAGGTCCAAGGAAATGTTGAAGAATTCATCAATGAGTTTGTCATTCTTTCGCAAATTAACCATAGAAATGTGGTCAAGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCGTTCCTAATGGTAACCTTTTCGAATATTTGCATGAACAAAATGATGACTTACCACCAATGACATGGGATATGTGTTTAAGAATTGCCACTGAAGTTGCAGGAGCTCTATTTTACTTGCACTCAGCTGCTTCTCAACCCATTTATCATAGAGACATCAAATCAACAAATATTCTATTGGATGGAAAGTATAAAGCAAAGATAGCAGACTTTGGTACATCAAGAATGATTTCCATTGAAGCTACCCATCTCACCACAGTAGTTCAAGGTACTTTTGGATACTTGGACCCTGAATATTTCCATACTAGTCAATTTACAGATAAGAGTGATGTCTACAGCTTTGGAGTAGTCCTTGTTGAACTTTTAACTAGGCAAAGGCCAATATCCTCCCTAAGACCACAAGAATCCAAAAGTTTAGCTTCATATTTTCTTCTCTCCATGGAGGAAAATCAGTTGTTTGATATTATTGATGAAAGAGTCATGAAGGAAGGGGAGAAAGAACATATCATTGCAGTTGCCAACCTTGCAAGTAGATGCTTAGAGTTGAATGGGAAAAAGCGACCAACTATGAAAGAAGTCACATTGGAATTAGAAGGGATTCGGAAATTGGCCGAAAGGAAGTCTAATACACAAGAAAACCATGAAGAAATTGAGCTTTCAATTCCTGTAATTGAAAACTACCAACCTTGGATTGGATATTCTACATCAAATCCATTGCCAACTCTAAGTGGTGAAACACTCACCTCAGACTCAGAGATTATGCATATTCTTTCATTAGAATAA 2136 0.3848 MILKFVHIIIISMIYPQASAQYSSIIARSGCNPTCGNVDIPFPFGMKDPKCYADKWFEIECKNTTQGKKPYLKHINLEVRDIDIYSWVTIMNPIYRRNCKSKDAGSVVDLRGGPFVYSQDANKFLAVGCNKIAFLVSNGSQVSGCVSICDDKEDVDDDMYILTCNGKYCCETSLPSYLSEYNATIQDLSKDHVSDQCRWALIFQSYSYYQNDDYTSIDLLKDVKHAPAVLEWEIPNNSTLKLPIAEFSYCNATNFTSSLNTNSGSRCSCNDGFYGNPYVTGGCKVSDPVPSWVNDYKNKSRAKWAIVGVCSSIGSIILLLGLWRLFKVVRRKLVQRRKEKFFKRNGGLLLEQRFSSGEVNDDKTKLFNLKDLKKATDHFNVNRVLGKGGQGTVYKGMLADGKIVAVKKFKVQGNVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFVPNGNLFEYLHEQNDDLPPMTWDMCLRIATEVAGALFYLHSAASQPIYHRDIKSTNILLDGKYKAKIADFGTSRMISIEATHLTTVVQGTFGYLDPEYFHTSQFTDKSDVYSFGVVLVELLTRQRPISSLRPQESKSLASYFLLSMEENQLFDIIDERVMKEGEKEHIIAVANLASRCLELNGKKRPTMKEVTLELEGIRKLAERKSNTQENHEEIELSIPVIENYQPWIGYSTSNPLPTLSGETLTSDSEIMHILSLE* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01373 711 Pfam Protein kinase domain 380 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01373 711 SMART serkin_6 379 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01373 711 Coils Coil 651 671 - -
Rops11g01373 711 CDD STKc_IRAK 385 651 - -
Rops11g01373 711 SUPERFAMILY Protein kinase-like (PK-like) 363 648 IPR011009 -
Rops11g01373 711 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 661 IPR045274 GO:0007166
Rops11g01373 711 Pfam Wall-associated receptor kinase galacturonan-binding 31 87 IPR025287 GO:0030247
Rops11g01373 711 Gene3D Phosphorylase Kinase; domain 1 348 452 - -
Rops11g01373 711 Gene3D Transferase(Phosphotransferase) domain 1 453 677 - -
Rops11g01373 711 ProSiteProfiles Protein kinase domain profile. 379 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01373 711 FunFam Wall-associated receptor kinase 2 453 671 - -
Rops11g01373 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Rops11g01373 711 FunFam Wall-associated receptor kinase 2 349 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01373 Rops-Chr11 20333310 20338733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01373 31 667 Receptor kinase-like Gene Family AT1G69730 42.877 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops11g01373 Pkinase 6.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01373 - - gmx:100798794 887.871