Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01369 ATGGAGCATAGTGACAGTAATGAGTCTATACCGGCCGTAAACGATTTTGATACACAGAGAGTTACCCCAGCATCCACACCAAGCAATGCAAATGTGATTAATGCAATGCTTTGCAACACAAATGTGCTAGACTGTAGCTTCTGTTGTCAACCTTTGAGTGTTCCTGTTTACCAGTGCATCAATGGACACGTTGTTTGTAGCAGCTGTTGGATCAAAATTGAGAATAAAAAGTGTAGCATGTGTTCGATGCCGATTCGCAGCCGTTGCCTTGCTATTGAGAAAGTGTTGGAATCGGTGAAAATAGAATGCGAGAATGCAGGATATGGTTGTAACAAGTTTTTGAGTTACAATGAGAAATCTGCACATGAAAAAACATGCATGTTTGAACCATGTCTATGTCCCCAAGTGGGTTGCGGCTTTCTCACAAACTCCAAGAAGTTAGCCTTCCACTTTGGGATTAAACATCAGTATAGTGAAGCACCATTTCAATATGGTGTAGTTTTCTATACCAAGTTTCACCCTCAGAAGAACATGGTTGTTCTTCAAGCGCTGGATGATGGTGAAATGTTTGTTATCCACAACATGATTGAGCCTCCTAAAGGGAATGTACTCAGTCTTTGTCACATTGGACCTAATACGCCAACCCCATTGTTTCGTTTTGAAATGATGGTTGGGGCACCACAGGGAATCGACCCTCTAACGCTAATATCTAAAGTTGAGAACATTCAAGGTCGCACAGCTTCTTCATCTTCAAGTTTCCTTTCGGTTCCGTACGAGTTTTTTCAACATTCTGGAATGATAGAGCTGGCAATTCGCATAAGAGCGATTGGTGGTGTACAGCCCAGAGCTGGAGGCAATCCATAG 864 0.4236 MEHSDSNESIPAVNDFDTQRVTPASTPSNANVINAMLCNTNVLDCSFCCQPLSVPVYQCINGHVVCSSCWIKIENKKCSMCSMPIRSRCLAIEKVLESVKIECENAGYGCNKFLSYNEKSAHEKTCMFEPCLCPQVGCGFLTNSKKLAFHFGIKHQYSEAPFQYGVVFYTKFHPQKNMVVLQALDDGEMFVIHNMIEPPKGNVLSLCHIGPNTPTPLFRFEMMVGAPQGIDPLTLISKVENIQGRTASSSSSFLSVPYEFFQHSGMIELAIRIRAIGGVQPRAGGNP* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01369 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 20 276 IPR044286 -
Rops11g01369 287 SUPERFAMILY TRAF domain-like 98 262 - -
Rops11g01369 287 Pfam Seven in absentia protein family 88 227 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops11g01369 287 ProSiteProfiles Zinc finger SIAH-type profile. 98 156 IPR013010 GO:0008270
Rops11g01369 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01369 Rops-Chr11 20298956 20301240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01369 42 273 C3H Transcription Factor Family AT2G41980 26.000 1.23e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01369 K04506 - cave:132183012 192.2