Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01368 ATGGCAAATATGGAGCATGGTGATAGTAATGATTCTATACCCACAGTAACCGATTTTGATGTATCAATAACTACCCCAAGTGATGGGAATGCCATTAATGCAACGCTTTGCAACACAAATGTGCTAGACTGCAGATTCTGTCATGAACCTTTGAGTGTTCCCGTTTACCAGTGCATCAATGGGCACCTTGCATGTGGCAACTGCTGGATCAAAATTGAGAATAAAATGTGTAGCATGTGTTCGATGCCGATTCGCAGCCGTTGCCTTGCTATTGAGAAAGTGCTGGAATCGGTGGAAACAACATGCGAGTATGCAGAATATGGTTGTAACAAGCTAGTGAGTTACAATGAGAAATCTGCACATGAGAAGACATGCATGTTTGAACCATGTTTATGTCCCCAAGTGGGTTGCGGCTTTCTCGCCAATTCTAGGGAGTTAGCCTCCCACTATAGGATGAAACACCAGCTTGGTGAAGCACCATTTCAATATGGTGTATTTTTCTTTACCAAGTTTCACCCTGAGAAGAACATGGTTGTTCTTAAAGCGCTGAATGATGGTGAATTGTTTGTTATCCACAACATTGTTGAGCCTCCTCTGTGGAACAAACTCACTATTTGTCACATTGGGCCTAATATGCCAAACCCGCAGTTTCGTTTTGAAATGATGGTGAAGGCTCCACAGGGAACCAAACCTCTAATGCTACAATCTAAAGTTGAGAACATTCAAGGCCGCACGGCTTCTTCATCATCACGTTTCCTTTCAGTTCCGTTTGAGTTTTTTCAACATTTTGGAAGGATAAAGCTGGCAATTCGCATAAGTGTGATCGGTGGTGCCCAGCCTAGACCTGAAGGCAATCCATAG 861 0.4321 MANMEHGDSNDSIPTVTDFDVSITTPSDGNAINATLCNTNVLDCRFCHEPLSVPVYQCINGHLACGNCWIKIENKMCSMCSMPIRSRCLAIEKVLESVETTCEYAEYGCNKLVSYNEKSAHEKTCMFEPCLCPQVGCGFLANSRELASHYRMKHQLGEAPFQYGVFFFTKFHPEKNMVVLKALNDGELFVIHNIVEPPLWNKLTICHIGPNMPNPQFRFEMMVKAPQGTKPLMLQSKVENIQGRTASSSSRFLSVPFEFFQHFGRIKLAIRISVIGGAQPRPEGNP* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01368 286 ProSiteProfiles Zinc finger SIAH-type profile. 97 155 IPR013010 GO:0008270
Rops11g01368 286 Pfam Seven in absentia protein family 87 271 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops11g01368 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 149 IPR013083 -
Rops11g01368 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 33 275 IPR044286 -
Rops11g01368 286 SUPERFAMILY TRAF domain-like 98 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01368 Rops-Chr11 20268912 20270981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01368 41 156 C3H Transcription Factor Family AT2G41980 34.454 4.89e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01368 K04506 - cave:132183012 198.364