Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01367 ATGGAAGGCAATGCGCTGGGAATTGAAGAACTTGCCCTTGACGAGCATAATATTGAACCTATTTCAAATGATAATGGTAGAGAGACTGATGGTTCCACAAAAGATGTTAGGGATGGGTCCATTTTTGTGATGCTTTCTGACCCTCATGTGCTTGATTGCTGCATTTGCTATGAACCCTTAGGTATTCCAGTGTTTCAGTGTGAAAATGGACATACAGCTTGCACTACATGCTATGCTAATCTCATGAAGAAGTGTGTCATGTGCTCAATGCCCATTGGCTTCAACCGTTGCAGAGCCATTGAGAATGTACTACAATCTATAAAAATATCATGTCAGAATAAAGAATATGGTTGCAAGAAGACAATAAGTTATAGTGAGAAGAATGAACATGAAAAGAAATGCATCTATGTACCATGTTACTGCTCTTTTTTAGGTTGTGACTTTGTTGCCTCATCCAAGGAGTTATCTAAGCACGTCAGTCTTAAACCTGGAGCTTCTCGAATCCAATTTTCATATGGTCACTCTTTTTTTGTCTCCTTGAAATCTAAGGATGTAGCCATTATTCTTCAGGAGAAAACTGATGGCAAAGTGTTTATTCTCAACAATAAAATTGTGCTTCTCGGAAATGCGGTCAATATTAGCTGCATTGGGCCTAACTCTTCTAAGTCGGGGTATCATTATGATATCTTGTTTAGATTTCAGTGGGACAGTATGAAGTTACAGTCTTTTATCGAGAACACTAGCACTTTACCTTTTCTTTCATCAAGGTTCCTCATGATTCCATTGAAATATTTTGGTTCTTCTGAACGTCTTAAACTAGAGATTTGCATAAGGCACATATAA 843 0.3784 MEGNALGIEELALDEHNIEPISNDNGRETDGSTKDVRDGSIFVMLSDPHVLDCCICYEPLGIPVFQCENGHTACTTCYANLMKKCVMCSMPIGFNRCRAIENVLQSIKISCQNKEYGCKKTISYSEKNEHEKKCIYVPCYCSFLGCDFVASSKELSKHVSLKPGASRIQFSYGHSFFVSLKSKDVAIILQEKTDGKVFILNNKIVLLGNAVNISCIGPNSSKSGYHYDILFRFQWDSMKLQSFIENTSTLPFLSSRFLMIPLKYFGSSERLKLEICIRHI* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01367 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 159 IPR013083 -
Rops11g01367 280 SUPERFAMILY TRAF domain-like 106 278 - -
Rops11g01367 280 ProSiteProfiles Zinc finger SIAH-type profile. 106 164 IPR013010 GO:0008270
Rops11g01367 280 Pfam Seven in absentia protein family 96 163 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops11g01367 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 33 280 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01367 Rops-Chr11 20262021 20264073 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01367 50 147 C3H Transcription Factor Family AT2G41980 31.633 7.76e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01367 K04506 - mtr:11432566 294.664