Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01347 ATGATATATCCACTGGCATCTGCAACTTATGGTCCGCCTCACGTGCCATCAACTGGTGCTTGTAAAGAGAAGTGTGGAAATGTTTCGATCCCTTACCCGTTTGGAATTGAATATGGGAACTGCTATGCAGAGAAGTGGTTTGAAATAGAATGCAAAAACAGTAGTCAAGGTGAGAAACCTTACCTCAAGTTCAGAAATTTGGAGGTAACAGACATTGATATCAGGCAACACACGGTTAGGGTCATGAATCCAATTCAGCGTAGGAACTGCACAAGCAAAAATGCTGCTGGGTCACCGGTAGTGTTTCACGAAAGCCCTTTCGTGTACTCCCAGGGTCTAAACAAATTTTTGGCCGTAGGTTGCAATAAAATTGCTTTCTTGGTGTCAAATGGTTCACAAGTCAGTGGTTGTGTGTCCATTTGTGATGATGGCAGAAGTGTTAACGCTAGCATGAACCTTTCAAGTTGCAGTGGCAGGTCCTGCTGCGAGACTTCTCTGCCGTCGCATCTTTCAGAATATAACGCAACATTTGAGGATCTAAGCAAGGATCATGTGAGTTATCAGTGCAGCTGGGCGCTGATTGGATCATATAAGGACAATTCGAGTATTAGTAATCTAGAAACTCAAGAATATGTTCCAGCTGTGCTTGAGTGGGAGATTCCAGACAATTCCACCCTGAAACACCCTGTAGATGACTTTTCCAAGTGCAGTGCCCCTACATCTAAACCTGCACAATCTGCACAATCTGCACGACCCGGTAAGACAACCCCAGAGGCAGTGGCACACTGGAGATGTAGCTGCAATGATGGCTTTGATGGCAATCCCTACGTCGCTGGAGGCTGTAAAGAGTTTTCTGTTGATATACATGTCCTGATTCTTGATGTTTCAGCCTTGCCATCGGTGAACAACTACAAAAAGAAAAGCCGAATAAATTGGGCCATAGTTGGAGTTTGTTCAAACATCGGATCCATCATTTTGATTCTTGGTCTTTGGCAGCTGTGTAGAGTTGTAAGGAGAAAACTGGTACAGAGGCGCCAAGAAAAATTCTTCAAACGAAATGGAGGATTATTGTTAGAACAAAGATTGTCTTCTGGTGAAGTTAAAAAGTTTAAGGTCCAAGGAAAGGTTGAAGAATTCATCAACGAGTTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCATTCCTAATGGTAACCTTTTCGAATATTTGCATGAACAAAATGATGACTTACCACCAATGACATGGGATATGCGATTGAGAATTGCCACTGAAGTTGCAGGAGCTTTATTTTACTTACACTCAGCTACTTCTTAA 1374 0.4199 MIYPLASATYGPPHVPSTGACKEKCGNVSIPYPFGIEYGNCYAEKWFEIECKNSSQGEKPYLKFRNLEVTDIDIRQHTVRVMNPIQRRNCTSKNAAGSPVVFHESPFVYSQGLNKFLAVGCNKIAFLVSNGSQVSGCVSICDDGRSVNASMNLSSCSGRSCCETSLPSHLSEYNATFEDLSKDHVSYQCSWALIGSYKDNSSISNLETQEYVPAVLEWEIPDNSTLKHPVDDFSKCSAPTSKPAQSAQSARPGKTTPEAVAHWRCSCNDGFDGNPYVAGGCKEFSVDIHVLILDVSALPSVNNYKKKSRINWAIVGVCSNIGSIILILGLWQLCRVVRRKLVQRRQEKFFKRNGGLLLEQRLSSGEVKKFKVQGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHEQNDDLPPMTWDMRLRIATEVAGALFYLHSATS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01347 457 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 370 IPR045274 GO:0007166
Rops11g01347 457 Pfam Wall-associated receptor kinase galacturonan-binding 21 82 IPR025287 GO:0030247
Rops11g01347 457 FunFam Protein kinase superfamily protein 371 417 - -
Rops11g01347 457 SUPERFAMILY Protein kinase-like (PK-like) 367 453 IPR011009 -
Rops11g01347 457 ProSiteProfiles Protein kinase domain profile. 322 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01347 457 Pfam Protein tyrosine and serine/threonine kinase 373 455 IPR001245 GO:0004672|GO:0006468
Rops11g01347 457 Gene3D Transferase(Phosphotransferase) domain 1 359 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01347 Rops-Chr11 20019568 20025421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01347 21 457 Receptor kinase-like Gene Family AT1G16260 36.111 7.63e-79 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops11g01347 PK_Tyr_Ser-Thr 2.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01347 - - gmx:100798794 433.335