Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01344 ATGATTCTGAAATTTTTTCATATCATCATCATTTCGATGATATATCCGGTGGCATCTGCACAATATTCTTCAACCATAGCAAAACTTGGTTGTAATTCGACATGTGGAAATCTTGACATCCCTTTCCCGTTCGGAATGAACGATCCCAATTGCTATGCAGGCAAGTGGTTTGAAATAGAATGCAAAAGTAGTCCTCATGGCGAGAAACCTTACCTCAAGCATATACACTTAGAGATAACATCCATTGATATCTCTGAAGGCACAGTTCGGATCATGAATCCGATTTACCGTAGGAACTGCAAGAATGAAGATGCAGGGTCAGTCGTAGATCTGAGAGGAGGCCCTTTCGTGTACTCCCAGTTTGAAAACTCATTTTTGGCCGGAGGTTGCAATAGCATTGCTTTTTGGATGTCAAATGGCACACAAGTTAGTGGTTGTGTGTCCATTTGTGATGGCAACAAAGACTTTGACAAAGACATGGACCTTGCAAGTTGCAATGGCAGGTACTGCTGCGAGACTTCTTTGCCGCCGAGTCTTTCAGAATTTAACACTACATTTAAAGATCTAAATGAGAGTAAGAGGAATGTTAGTGATCAGTGCAGTTGGGCGCTGATTGGGTCATATTATTATTATCTGTATGACCCGTATCCCAAGATTGTTGAAGTAAATCGTGGAAAACATGTTCCTGCTGTGCTTGAGTGGGAGATTCCAAACGAGATGCTGACCCTGAAACTCCCTGTAGCTGAATTTTCACAATGCAATGCCACAAATGTTACATCTTCACAAAACAGAGACTCAGGTCGGAGATGTACCTGCATTGACGGATACACTGGCAATCCCTACATTGCTGGAGGCTGTATTGGCACGCCATGGGTGAACGGCTACAAAAAGAAAAGTCGAGTAAAGTGGGCTATAGTGGGAATTTCTTCAAGCATCGGATCCATCATTTTACTTATTGGTCTTTGGCAGCTGTGTAAAGTAGTAAGGAGAAAACTGGTCAAGAAACGCAGAGAGAAATTCTTCAAAAGAAATGGAGGTTTGTTGTTAGAAAAAAAATGGTCATCTGGTGAAGTTAATGTTGACAAAGCTAAACTTTTCAGCTTAAAGGAATTAAAGAAGGCCACAGATCACTTTAATATGAACAGAGTACTTGGAAAGGGAGGTCAAGGTACTGTATATAAAGGCATGCTAGCCGATGGAAAAATTGTTGCAGTGAAAAAGTTTAAGGTACAAGGAAAGGTTGAAGAATTCATCAATGAGTTTGTCATTCTTTCACAAATTAACCATAGAAACGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCTTTACTTGTTTATGAATTCATTCCTAATGGTAACCTTTTCGAATATTTGCATCATCAAAATGATGACTTACCACCAATGACATGGGATATGCGATTAAGAATTGCAACTGAAGTTGCAGGAGCTCTATTTTACTTACACTCAGCTGCTTCTCAACCCATTTATCACAGAGATATCAAATCAACAAATATATTGCTTGATGGAAAGTATAAGCCAAAAGTAGCAGACTTCGGTACATCAAGAATGATTTCCATGGAAGCTACTCACTTGACTACAGTAGTTCAAGGTACTTTTGGATACTTGGACCCTGAATATTTTCGCACAAGTCAATTTACAGATAAGAGTGATGTTTACAGCTTTGGTGTGGTACTTGTTGAACTTTTAACTAGTCAAAAGCCAATATCTTCCCAAGGATCAGAAGAAGCCAAAAGTTTAGCTTCATATTTCCTTCTCTCTATAGAGGAAAATTGTCTATTTGATATTATTGATGAAAGAGTCATGAATGAAGGGGAGAAAGAGCATATCATTGCAATTGCCAACCTTGCAAGTAGATGCTTAGAGTTGAATGGGAAAAAACGACCAACTATGAAAGAAGTCACATTGGAACTCGAAGGGATCCAAAAATTGGTCACAAGAAAGTCTAATGCACAAGAAAATCATGAAGAAATAGAGCTTGCTATTGATGGAATTGAAGACTATCATCCTTGGACTAGATATTCTATGGAAAATCCATTGCTTACTCTAAGCAGTGAAACATTCTCATCAGACTCTGAGGTTACGCATATTCTTTCAATAGAATAG 2133 0.3877 MILKFFHIIIISMIYPVASAQYSSTIAKLGCNSTCGNLDIPFPFGMNDPNCYAGKWFEIECKSSPHGEKPYLKHIHLEITSIDISEGTVRIMNPIYRRNCKNEDAGSVVDLRGGPFVYSQFENSFLAGGCNSIAFWMSNGTQVSGCVSICDGNKDFDKDMDLASCNGRYCCETSLPPSLSEFNTTFKDLNESKRNVSDQCSWALIGSYYYYLYDPYPKIVEVNRGKHVPAVLEWEIPNEMLTLKLPVAEFSQCNATNVTSSQNRDSGRRCTCIDGYTGNPYIAGGCIGTPWVNGYKKKSRVKWAIVGISSSIGSIILLIGLWQLCKVVRRKLVKKRREKFFKRNGGLLLEKKWSSGEVNVDKAKLFSLKELKKATDHFNMNRVLGKGGQGTVYKGMLADGKIVAVKKFKVQGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHHQNDDLPPMTWDMRLRIATEVAGALFYLHSAASQPIYHRDIKSTNILLDGKYKPKVADFGTSRMISMEATHLTTVVQGTFGYLDPEYFRTSQFTDKSDVYSFGVVLVELLTSQKPISSQGSEEAKSLASYFLLSIEENCLFDIIDERVMNEGEKEHIIAIANLASRCLELNGKKRPTMKEVTLELEGIQKLVTRKSNAQENHEEIELAIDGIEDYHPWTRYSMENPLLTLSSETFSSDSEVTHILSIE* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01344 710 FunFam Wall-associated receptor kinase 2 452 670 - -
Rops11g01344 710 FunFam Wall-associated receptor kinase 2 348 451 - -
Rops11g01344 710 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 659 IPR045274 GO:0007166
Rops11g01344 710 SUPERFAMILY Protein kinase-like (PK-like) 359 647 IPR011009 -
Rops11g01344 710 Pfam Protein kinase domain 379 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01344 710 SMART serkin_6 378 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01344 710 Gene3D Transferase(Phosphotransferase) domain 1 452 676 - -
Rops11g01344 710 Gene3D Phosphorylase Kinase; domain 1 350 451 - -
Rops11g01344 710 Pfam Wall-associated receptor kinase galacturonan-binding 31 92 IPR025287 GO:0030247
Rops11g01344 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Rops11g01344 710 ProSiteProfiles Protein kinase domain profile. 378 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01344 710 Coils Coil 650 670 - -
Rops11g01344 710 CDD STKc_IRAK 384 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01344 Rops-Chr11 19962086 19968544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01344 2 702 Receptor kinase-like Gene Family AT1G16260 42.287 1.95e-179 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops11g01344 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01344 - - gmx:100798794 859.751