Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01343 ATGATTCTTCAATTAGCATTTAATATCATCATTTTGCTAATATGGCCCATTTATCCACTTGCATATGCACAAGATGGGATCATAGCACAACCTGGTTGTGATTCGACATGTGGAAATGTTGACATCCCTTTCCCATTTGGAATGAAAGATCCCAAATGCTATGCAGACAAGTGGTTTGAAATAGAATGCAGAAACACTTCTCAAGGTCAGAAACCTTTCTTGAAGTCTTCAAATCTTGAAGTGACATATATTGATGAGGCTTCAAGCATGGTTACCATCATGAATCCATTTTACCGTTGGAACTGCAAAAGCAAAAATGGTAAACCAATTATAAACCTGAAAGGAAGCCCTTTCATATATTCCCAGGAGTACAACTCATTTGTGGCCGTTGGTTGCAACTATCTTGCTTTCTTGCAATCAAATGGAACAGTAGCTGGTGGTTGTGTGTCCATTTGTGACGAACAAATTTTAAATTATTCCAACCTTGTAACTTATGGTTGCCACGGAAGGTGTTGCTGCGAGACTTCACTTCCTTTGCGTCTTTCAGAATATAACGTAACACTACAAGACATAAGGAACGAAAGCGTGACTCATGTTGAGTGTAGTTATGCTCTAATTGTAAGTAATTACTGGCTTTCGTTCCAGAGATCCTATATGTCTGAGTTGGAGATTCAGAGATTTATTGGGCTATTGAATATGGATCATGCTCCTGCGATGCTTGAGTGGGAGATTTTGAACTCGACCCTCCAACTCCCTTCAGATGCTAACTGTTATCACTCTAATGTCACATCTTCACAAAACAGAACCTCAGGTCGGAGATGTCAATGCTTCAAAGGCTTCTATGGCAATCCCTACATTGCTGGTGGCTGCACTACTACGCGAGGGTTGGATAAAGAAAATCGGGCGAAGAAGTGGGCTATAGTAGGAATTTTGCCAAGTCTCGCATCCATCATTTTCCTCCTTGGTCTATGGTTGTTGTCTAAAAGCGTAAGGAAAAGAATAATAAAGAAACGCAGAGAGAAAATTTTCAAAAAAAATGGTGGTTTGTTGTTACAACAGAGAATGTCTTCTGGAGAAGTTAATGTTGGTATTCTCTTCAGTTTGAATGAGTTAAAGAAGGCTACTGACAACTTTAATATGAACAGAATTCTTGGAAAGGGAGGTCAAGGTACCGTTTACAAAGGCATGCTAACTGATGGTAGAATTGTTGCTGTCAAAAAGTTTAAGGTTGAAGGAAAAGTTGAAGAATTCATCAACGAGTTTGTCATTCTTTCACAAATCAACAACAGAAATGTGGTCAAGTTATTAGGCTGTTGTCTGGAGACAGAAATTCCCTTACTTGTTTATGAATTCATTCCTAATGGCAATCTTTATGAATATTTGCAAGACCAGAATGAGGACCTACCGATAACATGGGATATGCGTTTGAGGATTGCCACTGAAATTGCAGGAGCTCTATTTTACTTACACTCAATTGCATCCCTGCCCATTTATCACAGGGACATCAAATCAACAAATATAATGTTGGATGAAAAGTATAGAGCAAAATTAGCAGATTTTGGAGCATCCAGAATAATTTCCACTGAAGCTACTCACCTTACCACAGTAATTCAAGGTACTTTTGGGTACTTGGACCCAGAATATTTTCATACTAGTCAGTTTACAGAAAAAAGTGATGTCTACAGCTTTGGAGTAGTTCTTGCAGAACTTTTAACAAGTAAAAAGCCAATATCCTCATTGAGATCCGGAGAAGTGAAGAGTTTAGCCTCATATTTTGTTCAATGTATGGAGGAGAACAATGTGTTTGACATTATTGACCAAAGAGTCATAAAGGAAGGGAATGAAGAACATATCATTGCAGTTGCCAATCTTGCAAATAGATGCTTAGAGATAAATGGGAAAAAACGACCAACAATGAAAGAAGTCATATTAGAACTAGAAAGGATTCGGGGAATGAATAGAAAGTCTAATGCACAGCAAAACCTTGAAGAAATTGAGCTTGCAATTGGTGAAATTGAAGACTACCAACCTTGGGATGGATTTTCTACATCAAATTCATTCTCAACTCTAAGCAGTGGAACACTCTCACAAGAGTCGGAGGTCATGGATATTGTTTCATTAAATTGA 2127 0.3818 MILQLAFNIIILLIWPIYPLAYAQDGIIAQPGCDSTCGNVDIPFPFGMKDPKCYADKWFEIECRNTSQGQKPFLKSSNLEVTYIDEASSMVTIMNPFYRWNCKSKNGKPIINLKGSPFIYSQEYNSFVAVGCNYLAFLQSNGTVAGGCVSICDEQILNYSNLVTYGCHGRCCCETSLPLRLSEYNVTLQDIRNESVTHVECSYALIVSNYWLSFQRSYMSELEIQRFIGLLNMDHAPAMLEWEILNSTLQLPSDANCYHSNVTSSQNRTSGRRCQCFKGFYGNPYIAGGCTTTRGLDKENRAKKWAIVGILPSLASIIFLLGLWLLSKSVRKRIIKKRREKIFKKNGGLLLQQRMSSGEVNVGILFSLNELKKATDNFNMNRILGKGGQGTVYKGMLTDGRIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLYEYLQDQNEDLPITWDMRLRIATEIAGALFYLHSIASLPIYHRDIKSTNIMLDEKYRAKLADFGASRIISTEATHLTTVIQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTSKKPISSLRSGEVKSLASYFVQCMEENNVFDIIDQRVIKEGNEEHIIAVANLANRCLEINGKKRPTMKEVILELERIRGMNRKSNAQQNLEEIELAIGEIEDYQPWDGFSTSNSFSTLSSGTLSQESEVMDIVSLN* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01343 708 CDD STKc_IRAK 384 649 - -
Rops11g01343 708 SUPERFAMILY Protein kinase-like (PK-like) 361 646 IPR011009 -
Rops11g01343 708 SMART serkin_6 378 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01343 708 FunFam Wall-associated receptor kinase-like 10 396 451 - -
Rops11g01343 708 Pfam Wall-associated receptor kinase galacturonan-binding 33 93 IPR025287 GO:0030247
Rops11g01343 708 Gene3D Phosphorylase Kinase; domain 1 346 451 - -
Rops11g01343 708 Gene3D Transferase(Phosphotransferase) domain 1 452 673 - -
Rops11g01343 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Rops11g01343 708 ProSiteProfiles Protein kinase domain profile. 378 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01343 708 Coils Coil 655 675 - -
Rops11g01343 708 Pfam Protein tyrosine and serine/threonine kinase 379 645 IPR001245 GO:0004672|GO:0006468
Rops11g01343 708 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 657 IPR045274 GO:0007166
Rops11g01343 708 CDD EGF_Lam 266 291 IPR002049 -
Rops11g01343 708 FunFam Wall-associated receptor kinase 2 452 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01343 Rops-Chr11 19925345 19930313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01343 9 671 Receptor kinase-like Gene Family AT1G16260 42.385 1.82e-178 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops11g01343 PK_Tyr_Ser-Thr 6.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01343 - - mtr:11415953 946.421