Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01342 ATGATTCTGCAACTAGCATTTCATATCATCATTTTAATAATTCCACTGGCATATGCACAACATGGGATTATAGCACAACCTGGTTGTAATTTGACATGTGGAAACGTTGACATCCCTTTCCCATTTGGAATGAAAGATCCCAAATGCTATGCAGACAAGTGGTTTGAAATAGAATGCAGAAACATTTCTCAAGGTCACAAACCTTACTTGAAGTCTTTAAATCTTGAAGTGACATATATAGATGAGGCTTCAAGCACGGTTAGCATCATGAATCCAATTTACCGTTCGAACTGCAAAAGAAAAAACGCTAACTCAGTCATAAACCTTAGAGAAAGCCCTTTCGTATATTCCTACGACTACAACTCATTCTTGACCGTTGGTTGCAACTATCTTGCTTTTTTGCGGTCAAATGGGTCACTCGCTGGTGCTTGTGTGTCCCTTTGTGACAGCAAAATTGATTATTCCATCCTTGGAAACGAAGGTTGCCACGGCAGGTGCTGCTGCGAGACTTCACTTCCCTTGCCTCTTTTTGAATATAACCCAACAATACAAGAACTGAGTAATCAAAGCGTGAGTCATCATGAGTGTACTTATGCTCAAATTGTAAGTATTTACTGGATCTCGTTCCGGAGATCCTATTTGTCCGATTTAGAGATTCAGAGATTGAGAAACCTAAGGAATATTGATTATGCTCCTGCTGTGCTTGAGTGGGAAATTATGAACTCGACCCTGAAACTCCCTTTAGATGCCAATTGTTATGAGTCTAATGTCACATCTTCACAAAACAGAACCTCAGGTCGGAGATGTCAATGCTTCAAAGGCTTCTATGGCAATCCCTACATTGCTGGTGGCTGCACTGGGGCGCGAGGGTTCGATAAAAGTAACCGGGCGAAGAAGTGGGTTATAGTAGGAACTTTGCCAAGTCTTGGATCCATCATTTTCCTCCTTAGTCTATGGTTGTTGTCAAAAGTTGTTAGGAAAAGGATAATAAAGAAACGCAGAGAGAAATTTTTCAAAAAAAATGGTGGTTTGTTGTTACAAAAAAGAATGTCATCCGGAGAAGTTAATGGTGACAAAGGTATTCTCTTCAGCTTGAAGGACTTAAAAAAAGCCACCGGAAATTTTAATATTAACAGAATTCTTGGAAAGGGAGGTCAAGGTACCATTTACAAAGGCATGCTAGTAGATGGTAGAATAGTTGCTGTGAAAAAGTTTAAGGTCGAAGGAAAGGTTGAAGAATTCATCAACGAGTTTGTCATTCTTTCACAAATCAACAACAGAAATGTGGTCAAGTTATTAGGATGTTGTTTGGAGACAGCAGTTCCTTTACTTGTTTATGAATTCATTCCTAATGGTAATCTTTTTGAATATTTACATGACCAAAATGAGGGCTTACCAATGACATGGGATATGCGTTTCAGAATTGCCACTGAAATTGCAGGAGCTCTATTTTACTTGCACTCAATTGCATCCCAGCCCATTTATCACAGGGACATCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCAGATTTTGGAGCATCCAGAATAATTTCCATTGAAGCTACTCACCTCACCACAGCAGTTCAAGGTACTTTTGGATACTTGGACCCAGAATATTTTCATACTAGTCAATTTACAGAAAAAAGTGATGTCTACAGCTTTGGAGTAGTTCTTGCAGAACTTTTAACTAGTCAAAAGCCAATATCTCCAACAAGATCAGGAGAACCTAAGAGTTTAGCCTCCTATTTTGTTCAATGTATGGAAGAGGATAATGTTTTTGACATTATTGACAAAAGAGTCATAAAAGAGGCTAAGATAGAACATATCATTGCAGTTGTTAATCTTGCAAATAGATGCTTACAATTAAATGGAAAAAGACGACCAACTATGAAAGAAGTCATTTTAGAATTAGAAGGGATTCGGGGAATAGACAGGAGGTCTAATGCACAACAAAACCAAGAAGAAGTTGAGCTTGCAATTGGTGGAATTGAAGCCTGCCAACCTTGGGATGGGTTTTCTTCATCAAATTCATTACCAATTCTTAGTAGTGGAACACTCTCACCAGAGTCAGAGGTTGTGCATATTGTTTCATTAGAATAA 2118 0.3829 MILQLAFHIIILIIPLAYAQHGIIAQPGCNLTCGNVDIPFPFGMKDPKCYADKWFEIECRNISQGHKPYLKSLNLEVTYIDEASSTVSIMNPIYRSNCKRKNANSVINLRESPFVYSYDYNSFLTVGCNYLAFLRSNGSLAGACVSLCDSKIDYSILGNEGCHGRCCCETSLPLPLFEYNPTIQELSNQSVSHHECTYAQIVSIYWISFRRSYLSDLEIQRLRNLRNIDYAPAVLEWEIMNSTLKLPLDANCYESNVTSSQNRTSGRRCQCFKGFYGNPYIAGGCTGARGFDKSNRAKKWVIVGTLPSLGSIIFLLSLWLLSKVVRKRIIKKRREKFFKKNGGLLLQKRMSSGEVNGDKGILFSLKDLKKATGNFNINRILGKGGQGTIYKGMLVDGRIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETAVPLLVYEFIPNGNLFEYLHDQNEGLPMTWDMRFRIATEIAGALFYLHSIASQPIYHRDIKSTNILLDEKYRAKLADFGASRIISIEATHLTTAVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTSQKPISPTRSGEPKSLASYFVQCMEEDNVFDIIDKRVIKEAKIEHIIAVVNLANRCLQLNGKRRPTMKEVILELEGIRGIDRRSNAQQNQEEVELAIGGIEACQPWDGFSSSNSLPILSSGTLSPESEVVHIVSLE* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01342 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Rops11g01342 705 Gene3D Transferase(Phosphotransferase) domain 1 449 670 - -
Rops11g01342 705 CDD STKc_IRAK 381 646 - -
Rops11g01342 705 Pfam Wall-associated receptor kinase galacturonan-binding 29 90 IPR025287 GO:0030247
Rops11g01342 705 ProSiteProfiles Protein kinase domain profile. 375 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01342 705 Gene3D Phosphorylase Kinase; domain 1 343 448 - -
Rops11g01342 705 SMART serkin_6 375 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01342 705 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 657 IPR045274 GO:0007166
Rops11g01342 705 FunFam Wall-associated receptor kinase-like 10 393 448 - -
Rops11g01342 705 Pfam Protein kinase domain 376 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01342 705 SUPERFAMILY Protein kinase-like (PK-like) 361 641 IPR011009 -
Rops11g01342 705 FunFam Wall-associated receptor kinase 2 449 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01342 Rops-Chr11 19869246 19875534 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01342 29 647 Receptor kinase-like Gene Family AT1G69730 42.411 1.34e-173 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops11g01342 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01342 - - mtr:11415953 915.99