Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01340 ATGCCAACTGCCATGACTCTAATGTCACATCTTCACAAAACAGAACCTCAGGTCGCAGATGTCAGTGCTTCACAGGCTTCAATGGCAATCCCTACATTGCTGGTGGCTGCACTGATTATTGGAAAGGGAGGTCAAGGTACTGTTTACAAAGGCATGCTAGTAGATGGTAGAATTGTTGCTGTGAAAAAGTTTAGGGTTGAGGGAAAGGTTGAAGAATTCATCAATGAATTTGTCATTCTTTCACAAATCAACAACAGAAATGTGGTCAAGTTATTAGGATGTTGTCTGGAGACAGAGATTCCCTTACTTGTTTATGAATTCATTCCTAATGGTAACCTTTTTGAATATTTACATGAGCAAAATGAGGACTTACCGATGACATGGGACACACGTTTGAGAATTGCCACTGACATTGCAGGAGCTCTATTTTACTTACACTCAACTGCATCTCAACCCATTTATCATAGGGACATCAAATCAACAAATATACTGTTGGATCAAAAGTATAGGGCAAAATTAGCTGATTTTGGAGCATCCAGAATAATTTCAATTGAAGCTACTCACCTCACCACAGTAGTTCAAGGTACTTTTGGATACTTTGATCCAGAATATTTTCATACTAGTCAATTTACAGAAAAAAGTGATGTCTACAGCTTTGGAGTAGTTCTTGCAGAAGTTGTAACTAGTCAAAAGCCAATTTTCTCGGTAAAATCTGGAGAACCTAAGAGTTTAGCCTCATATTTTGTTCATTGTATGGAGGAGAATAATGTATTTGACATTATTGACAAAAGAGTTATAAAGGAAGGGAAGAAAGAAGATGTCATTGCAGTTGCCAATCTTGCTAATAGATGCTTGGAGTTGAATGGGAAGAAACGACCAACTATGAAAGAAGTTGCATTGGAACTAGAAGGGATTCGAGGAATCGATAGGAAGTCTAATGCACAAGAAGACCAAGAAGAAATTGAGCTTACAATTGGTGGAATTGAAGACTACCAACGTTGGGATGGATTTTCTTCATCAAATTCATTACCAACTCTAAGCAGTGGAACACTTTCACCAGAGTAG 1065 0.3803 MPTAMTLMSHLHKTEPQVADVSASQASMAIPTLLVAALIIGKGGQGTVYKGMLVDGRIVAVKKFRVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHEQNEDLPMTWDTRLRIATDIAGALFYLHSTASQPIYHRDIKSTNILLDQKYRAKLADFGASRIISIEATHLTTVVQGTFGYFDPEYFHTSQFTEKSDVYSFGVVLAEVVTSQKPIFSVKSGEPKSLASYFVHCMEENNVFDIIDKRVIKEGKKEDVIAVANLANRCLELNGKKRPTMKEVALELEGIRGIDRKSNAQEDQEEIELTIGGIEDYQRWDGFSSSNSLPTLSSGTLSPE* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01340 354 FunFam Wall-associated receptor kinase 2 108 324 - -
Rops11g01340 354 Pfam Protein kinase domain 39 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01340 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Rops11g01340 354 Gene3D Transferase(Phosphotransferase) domain 1 108 330 - -
Rops11g01340 354 Gene3D Phosphorylase Kinase; domain 1 34 107 - -
Rops11g01340 354 ProSiteProfiles Protein kinase domain profile. 34 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01340 354 SMART serkin_6 34 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01340 354 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 39 316 IPR045274 GO:0007166
Rops11g01340 354 CDD STKc_IRAK 40 305 - -
Rops11g01340 354 FunFam Wall-associated receptor kinase-like 10 52 107 - -
Rops11g01340 354 SUPERFAMILY Protein kinase-like (PK-like) 39 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01340 Rops-Chr11 19798539 19801749 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01340 39 338 Receptor kinase-like Gene Family AT1G69730 60.586 1.87e-127 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops11g01340 Pkinase 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01340 - - gmx:100798794 503.442