Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01322 ATGAACTCCATTCCACGTTCTGCATCTTTTAAAGCCAACAGCCAGAAACCTATCCCGTTTCAATTTTCTGAAGTCAACTTTCAGTTTCAATTATTCAAAGAATGTCCAAGTGCAGATGAACACCAGAGACGTCAAATAACTACAAGTCTTGGGCTTAAGCCAAAACAAGTGAAATTTTGGTTTCAGAATGAGAGGACTCATGTAAAGACTCAAAAAGGGCAAGAAGATAACACTACTCTTCGTCTTGAGAATGAAAGGATCCACAATGAAAACCTTGCAATCCTGGAGGCGTTGAAGAAAAAAATTTGCACTTCTTGTGAGGGTCTAATCTATAAAGATATTCAAGAGCGTGAACATTCTCTGAAACAACTTGAGCTTGAAAATGCCTGTCTAAAAGAAGAGCATGAGAATGTGTCTAAACGTTTTACAATGCATGTGGAGAATTTGACATATACATCAGAACTAGAGTTGCGACTAGCTCCCCCTTCAGGATCTGTATATGATCCATCACTTAGAAACTTTTTAAATTTGGTTGTTGAGAGTGCTAGTATGAATCTAGATATTGGTTCAATGAGTCTTTTAGTTCCAAATGAAAATAAGTTGCCCAAACCGACAAGAAAAATGACACAAATGGAAAAGGCAATGATGTTAGAAATTGGAATTGCTGCTAAGGAAGAAGTACTTAAGGAGACTTGTTCTTCATCCTGA 708 0.3715 MNSIPRSASFKANSQKPIPFQFSEVNFQFQLFKECPSADEHQRRQITTSLGLKPKQVKFWFQNERTHVKTQKGQEDNTTLRLENERIHNENLAILEALKKKICTSCEGLIYKDIQEREHSLKQLELENACLKEEHENVSKRFTMHVENLTYTSELELRLAPPSGSVYDPSLRNFLNLVVESASMNLDIGSMSLLVPNENKLPKPTRKMTQMEKAMMLEIGIAAKEEVLKETCSSS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01322 235 CDD homeodomain 32 72 IPR001356 GO:0003677
Rops11g01322 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 230 IPR042160 -
Rops11g01322 235 Coils Coil 114 141 - -
Rops11g01322 235 SUPERFAMILY Homeodomain-like 30 75 IPR009057 -
Rops11g01322 235 Pfam Homeodomain 30 69 IPR001356 GO:0003677
Rops11g01322 235 Gene3D - 11 98 - -
Rops11g01322 235 ProSiteProfiles 'Homeobox' domain profile. 32 71 IPR001356 GO:0003677
Rops11g01322 235 SMART HOX_1 15 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01322 Rops-Chr11 19382766 19384839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01322 32 229 Homeobox Transcription Factor Family AT1G73360 36.967 3.89e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops11g01322 Homeodomain 3.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01322 K09338 - gmx:100794552 153.295