Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01321 ATGGATTCTTCAATGGGTGGTATTGGTGGAACTGGTGATGAAGACATTCAGAACTCACACAATGGAAAAAGGCCCTCCTACAATCGTCTTAGTTCCTATCAAACAGCCATACTTGAAAAATTCATCATGGGGTGCCCACATCCAGATGAAGCCCAACGACGTCAATTAGCCATTGAGGTTGGACTTGAGCCCCAACAAATTAAATTTTGGTTTCAGAACAAGAGAACTCAACTTAAGATAACAACACTTAGGGTTGAGAATGATAAGATGCATAGCGAAAACCTCCTAATGAGAGAGGCACTTAAGAACACACTTTGCCCATCTTGTGGGGGTCAACCATATCCTGAAGGAGAGCACGGACCTTTTATGCAAAATATGCAACGTGAAAATGCTCAGCTGAAAGAAGAGATTGAGAAAGTGTCTAACCTTCTTGCAAGGTACTTGGAGCAACAAGTATCACAACCTGAGGTGCACCAAGCTCCTATTCCTATCATAGGATCTTCACGTGAGGCTTCTATTCCTAATGTAGGATCTTCACATGATCTAGTACTTGGAAGTTTGCAAAACCAAGGGAATGATGGAAGTCCAAGTCATGATCGACGTTTTGGTACGCCAATTATGGATGATGGCATATTATTGCACAACCCGATGGAAAGTTTAGATAGAGAAAAAACATTGATGTATAAGGTTGCAACTACTGCAATGGATGAATTAGTTAGGCTTTTGCGCATCAATGAGCCTTTTTGGGTCAACTCTTCAACTCAAGATGGGAAACTCACTCTTCATAAGGAAACTTATGAAATTTTTTTCCCTAAGACCAAACACTTCGAAGGTGCCAACGTGCATGTAGAGTCATCAAAATATTCAGGAATAATCAACCTTAGTGGCATCCAAATGGTTGACATGTTTCTAGATTCAGACAAATGGGTTAATCTTTTCCCAACAATTGTCACAAATGCTAAAACAATCAAAGTGATTGAAGGCGGTTTGTCAGTGAGTCGAAGTGGAGCCTTGCAGTTGATGTATGAAGAAATTCACATTCTTTCACCTTTAGTGCGACCTCGTGAATTTCACTTCCTTCGCTATTGTCAACAACTTGAAGTTGGGGTATGGGTGATAACAGATGTGTCATTTGATTCTATTGAACAGAACACCCCACTTTCTAACTCTTGGAGATATCCCTCTGGATGCATGATTCAGGAAATCCCTAATGCAGGTTGCATGGTTACTTGGGTTGAACATGTTGAAGTGGATGATAAGATCCAAACCCACCAACTCTATAGAGATCTTGTTGATATCAATATTGCATATGGAGCAGAAAGATGGATTAAGGAGCTTCAAAGAATGTGCGAGAGATTTGCTAGCTATTGGGTTCGAACAATACCTAATCATGACTCTGGAGGAGTGATTAATTCACTTGAAGGGAGAAGGAGTGTGATGAAGATTGCTCATCGAATGGTTCAAATGTTCTGTAAAAGTTTAACCATGTTAGGTCAAGTGGACGTCTCACATGCAACTGTGGAGAATGATAGTGTGGTTAAGGTGTCTGTTAGTAGAAGCACAGGTATAGGCGAGCCAAATGGCACGGTTATTATTGCTGCAACCTCTTTTTGGCTTCCTCTTCATTATGAGAAAGTTTTTGAGTTCTTCGTTGATGTCAAAAGACGAGCTCAGTGGGATGTTATTGCTTTTGGAAATTCAGTGCATGAGATTGCCCACATTTCAAACGGAATTCATCATGGCAACTGTGTATCAATTATTCAGCCACACATCCCTATCGAGAAAAATGTGATGATTCTTCAAGAAAGTTTTATAGATTCCATGGGATCATATGTTGTATATGCTCCAACTGATTTAGCAGCTATGAATATAGCCATAAGGGGTGAAGACATTTCAATGTTATCAATTCTTCCATCAGGTTTTGTCATCTCTGTAGATGGCCAACCAAATGCAACCTCGAGAGCATTTAACAATGGAAATGCTGATAGATCAGAAGGCTCGTTGTTGACAGTGGTATTTCAAATATTGGCTTCTGGTCCAGATGGAATCAAGTTGCAAAACATGAAATCTATGGCAGATGTCAACACCCTTTTAACATCAACAGTACATAAAATAAAGGATGCTCTGAACTGTAACAATTAG 2142 0.3996 MDSSMGGIGGTGDEDIQNSHNGKRPSYNRLSSYQTAILEKFIMGCPHPDEAQRRQLAIEVGLEPQQIKFWFQNKRTQLKITTLRVENDKMHSENLLMREALKNTLCPSCGGQPYPEGEHGPFMQNMQRENAQLKEEIEKVSNLLARYLEQQVSQPEVHQAPIPIIGSSREASIPNVGSSHDLVLGSLQNQGNDGSPSHDRRFGTPIMDDGILLHNPMESLDREKTLMYKVATTAMDELVRLLRINEPFWVNSSTQDGKLTLHKETYEIFFPKTKHFEGANVHVESSKYSGIINLSGIQMVDMFLDSDKWVNLFPTIVTNAKTIKVIEGGLSVSRSGALQLMYEEIHILSPLVRPREFHFLRYCQQLEVGVWVITDVSFDSIEQNTPLSNSWRYPSGCMIQEIPNAGCMVTWVEHVEVDDKIQTHQLYRDLVDINIAYGAERWIKELQRMCERFASYWVRTIPNHDSGGVINSLEGRRSVMKIAHRMVQMFCKSLTMLGQVDVSHATVENDSVVKVSVSRSTGIGEPNGTVIIAATSFWLPLHYEKVFEFFVDVKRRAQWDVIAFGNSVHEIAHISNGIHHGNCVSIIQPHIPIEKNVMILQESFIDSMGSYVVYAPTDLAAMNIAIRGEDISMLSILPSGFVISVDGQPNATSRAFNNGNADRSEGSLLTVVFQILASGPDGIKLQNMKSMADVNTLLTSTVHKIKDALNCNN* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01321 713 SMART START_1 229 452 IPR002913 GO:0008289
Rops11g01321 713 Gene3D - 228 451 IPR023393 -
Rops11g01321 713 Pfam Homeodomain 27 79 IPR001356 GO:0003677
Rops11g01321 713 CDD START_ArGLABRA2_like 224 451 - -
Rops11g01321 713 Pfam START domain 230 452 IPR002913 GO:0008289
Rops11g01321 713 SUPERFAMILY Bet v1-like 475 680 - -
Rops11g01321 713 ProSiteProfiles START domain profile. 220 455 IPR002913 GO:0008289
Rops11g01321 713 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Rops11g01321 713 Coils Coil 123 150 - -
Rops11g01321 713 SUPERFAMILY Bet v1-like 221 454 - -
Rops11g01321 713 CDD homeodomain 29 79 IPR001356 GO:0003677
Rops11g01321 713 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Rops11g01321 713 SUPERFAMILY Homeodomain-like 23 90 IPR009057 -
Rops11g01321 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 710 IPR042160 -
Rops11g01321 713 MobiDBLite consensus disorder prediction 1 28 - -
Rops11g01321 713 SMART HOX_1 23 85 IPR001356 GO:0003677
Rops11g01321 713 Gene3D - 11 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01321 Rops-Chr11 19358666 19363879 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01321 23 710 Homeobox Transcription Factor Family AT1G73360 42.837 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops11g01321 START 2.3e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01321 K09338 - gmx:100795075 906.36