Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01315 ATGGGTTTCAAGAGCTCCAAAATACTTTTTGATAGGATCGATCTGGGGGAAAGGCAAGAACCCTGGGCTGTGGAGTCTGCCAAGTCAATTGCAACTCTAGTTGAGGAACTTGATATTCAAGAGGCATATTCAACTGTTGGAACTCTTGATTTTATGGCACCTGAAGTTTTGCTCAATAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGATGATCCAAGAATGACCTGCTGTAAAATTGTTAACTGGAAAACATGCCTGAAATTCCCCGAAGAACCCAAAATATCTATTGAAGCTAAGGATCTGATTTGTCACTTACTATGTGATGTTGACACAAGACTAGGAACCAGAGGAGTAGAAGAAATAAAGGTAACAACTCTCATAGGTGTGATCAATGGCATGCCCCTGTTGTTGAATCACTATGGCTTGGTTGTCTCTATTGGACTTGGAACAATGACTCAAAATGAGCGAGAAGATAACACTACTCTTCGTCTTGAGAATGAAAGAATCCACAATGAAAACCTGGCAATTCTGGAGGCATTGAAGAATAAAATTTGCACTTCTTGTGGGGATCTAATCTATAAAGATTTTCAAGAGCGTGAACATTCTCTGAAACAACTTGAGCTAGAAAATGTCCGTCTAAAAGAAGAGCATGAGAAGATGTTTAAACCTTTTACAACGCGTGTGGAGAATTTGACACCTTTATTAGAACTAGAGTTGCGGCTAGCTCCCTCTTCAAGATCTTCATATGTTCCATCACTTAGAAACTCTCTCAATTTGGTTGTTGAGAGTGCTAATATGAATCTAGATATTGGTTCAATGAGCCTTTCAGTTCCAAATGAAAATAAGTTGCCCAAACCAACAAGCAAAACAACAGAAATAGAAAAGGCAATGATGTTAGAGATTGGAATTGCTGCTAAGGAAGAAGTACTTAAGCTTTTGTGCACGAATGAGCCCTTATGGGTCAAGTCTTCAGTCGATAGGAGACTTGTTCTTCATCCTGAAAACTATGGAAAGCTCTTTCCTAAGGCTAATCATTTCGAAAGTTCCAAAACGCATGTGGAATCAACAAAAGATTCCCGAATTGTGAAAATTAATGGGAAACAATTAGTGGACATATTTTTAGATTCGGAAAAATGGGCAGATCTTTTCTCAACAATTATCACAAGAGCGCATACAATTGAAGTGCTTGAAAGAGGTTCCTTAGAAAATCGAAGTGGAGCTTTACTATTGATGCATGAAGAGATGCACGTGCTTTCACCATTGGTGCCATCTCGAGCATTCAACTTTGTTCGGTATTGCGAACAAGTTGAAGCTGGTATATGGGTGATAGCAGATGTATCTTATGGTTACTTCAAAGAGGATGGTCCTTATTCTAGCACTTGGAGGTTTCCTTCTGGATGCATGATTCATGAAATCTCTCCTACGTCTTCCCAGGTTTCTTGGATTGAACATGTGGAAGTGGATGACAAAGTCCAAACACATCGATTGTATAGAGACCTTGTTAACAGCGCTATTGCATATGGAGCGAACATGTGGCTTATGGAACTTTAA 1605 0.3944 MGFKSSKILFDRIDLGERQEPWAVESAKSIATLVEELDIQEAYSTVGTLDFMAPEVLLNKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMTCCKIVNWKTCLKFPEEPKISIEAKDLICHLLCDVDTRLGTRGVEEIKVTTLIGVINGMPLLLNHYGLVVSIGLGTMTQNEREDNTTLRLENERIHNENLAILEALKNKICTSCGDLIYKDFQEREHSLKQLELENVRLKEEHEKMFKPFTTRVENLTPLLELELRLAPSSRSSYVPSLRNSLNLVVESANMNLDIGSMSLSVPNENKLPKPTSKTTEIEKAMMLEIGIAAKEEVLKLLCTNEPLWVKSSVDRRLVLHPENYGKLFPKANHFESSKTHVESTKDSRIVKINGKQLVDIFLDSEKWADLFSTIITRAHTIEVLERGSLENRSGALLLMHEEMHVLSPLVPSRAFNFVRYCEQVEAGIWVIADVSYGYFKEDGPYSSTWRFPSGCMIHEISPTSSQVSWIEHVEVDDKVQTHRLYRDLVNSAIAYGANMWLMEL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01315 534 ProSiteProfiles START domain profile. 309 534 IPR002913 GO:0008289
Rops11g01315 534 Pfam Protein kinase domain 40 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01315 534 Gene3D Transferase(Phosphotransferase) domain 1 10 149 - -
Rops11g01315 534 Coils Coil 214 234 - -
Rops11g01315 534 SMART serkin_6 1 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01315 534 FunFam Non-specific serine/threonine protein kinase 41 153 - -
Rops11g01315 534 CDD START_ArGLABRA2_like 313 531 - -
Rops11g01315 534 ProSiteProfiles Protein kinase domain profile. 1 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01315 534 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 170 534 IPR042160 -
Rops11g01315 534 SMART START_1 318 534 IPR002913 GO:0008289
Rops11g01315 534 Gene3D - 326 525 IPR023393 -
Rops11g01315 534 Pfam START domain 321 531 IPR002913 GO:0008289
Rops11g01315 534 SUPERFAMILY Bet v1-like 309 532 - -
Rops11g01315 534 SUPERFAMILY Protein kinase-like (PK-like) 38 140 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01315 Rops-Chr11 19271411 19278946 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01315 168 534 Homeobox Transcription Factor Family AT3G03260 37.940 2.33e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Rops11g01315 START 1.4e-26 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01315 K09338 - gmx:100794552 377.096