Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01300 ATGACTAACTACTCCTACCCTCACATCTGTCAATGTCTAACTCGATTACTAACTTTCCGGTCACACTTTCCGGTGACTATCACCGGCCACCGCCACAAGACCGGCCAACAATTGGTGGAGGAAGTGTTGTCCCTGGCACAAGGCCTTATCCAGCTAGGTGTCACACCTGGTGATGTGGTTGCCATCTCTGCTTACAACAGTGATTGGTATCTGGAGTGGCTATTAGCCATTGCATTTGTTGGAGGAATAGCTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTGGCAATGATTGCAGTGAGGCCAGTGATGTTAGTGATTGATGAGAGCAGCTATGCTTGGTACTTAAAAATCCAGCAAAATGATATTCCATCTCTTAGGTGGCATGTTTTGTTGGATTCCCCTTCCTCAGATTTTACAAAGAAGTGGAATGTGTTAACTCCAGAAATGCTTAAGAAGCATCATGAAAAGCCTCTAGAATTTGATTATTCATGGGCACCTGGAGGCGCTGTCATAATATGCTTTACTTCAGGAACTACGGGAAAGCCTAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCATACAATCCCTTGCCAAGATTGCCATAGTTGGATACAGTGAGGATGATGTTTATCTGCATACTGCTCCATTATGCCATGTGGGGGGCTTGTCGTCAGCCATGGCCATGCTTATGGTTGGAGGTTGCCATGTATTGATGCCAAAATTTGATGCAGAGTCAGCTGTTGGTGCCATAGAGCAATATAAAGCGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATTTCTATAGTTAGGCACAAGGAAACCTGGAAAGGGGGAGAAAATGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTCATCAAGGACACTAGCATATTCTTCCATAAAGCTAAGCTTATTTCAGCTTATGGGATGACAGAGACATGCTCTTCATTGACATTCCTGACACTGTATGATCCACTGCACAAAACCACTAGCCAGCCCCTTCAAACACATGATGAGACAGGATCCAATCTCATTCACCAACCACAAGGTGTTTGTGTTGGCAAGGCTGCACCTCATGTAGAACTGAAGATATGTGCAGATGCATCTGGTCACATTGGGAGAATTTTAACTAGAGGACCACATTTAATGCTCAGGTATTGGGATCAAATCCTCACAAACCCATCAAATCAAAGGAATGAAGTCTGGCTTGACACAGGTGACATTGGATCAATTGATTGTTATGGTAATTTATGGCTCCTTGGAAGAACAAATGGTAGAATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGGTTGAGGCAATTCTACTAGAACATCCAGGGATTGCAAGTGTTGTTATTGTGGGAATCCCAGATGCTCGTTTGACAGAGATGGTAGCAGCATGTATCCACCTAAGAGAAAATTGGCAATGGTTGGAGCATACTACTTCAAATGAAGAGTTTCACCTATCTAGAAAGAATCTACGGCAATACTGCATGGAAAGTAATTTAAGCAGGTTTAAGATACCTAAGATGTTTATTGAATGGAGGAAGCCTTTTCCACTCACTACCACAGGAAAAATAAGAAGAGACCAAGTCCGAAAGGAAGTTATGTCTCACCTACATTCTTTGCATAGTAATCTTTGA 1683 0.4326 MTNYSYPHICQCLTRLLTFRSHFPVTITGHRHKTGQQLVEEVLSLAQGLIQLGVTPGDVVAISAYNSDWYLEWLLAIAFVGGIAAPLNYRWSFEEARLAMIAVRPVMLVIDESSYAWYLKIQQNDIPSLRWHVLLDSPSSDFTKKWNVLTPEMLKKHHEKPLEFDYSWAPGGAVIICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYSEDDVYLHTAPLCHVGGLSSAMAMLMVGGCHVLMPKFDAESAVGAIEQYKATSFITVPAIMASLISIVRHKETWKGGENVKKILNGGGSLSLELIKDTSIFFHKAKLISAYGMTETCSSLTFLTLYDPLHKTTSQPLQTHDETGSNLIHQPQGVCVGKAAPHVELKICADASGHIGRILTRGPHLMLRYWDQILTNPSNQRNEVWLDTGDIGSIDCYGNLWLLGRTNGRIKSGGENIYPEEVEAILLEHPGIASVVIVGIPDARLTEMVAACIHLRENWQWLEHTTSNEEFHLSRKNLRQYCMESNLSRFKIPKMFIEWRKPFPLTTTGKIRRDQVRKEVMSHLHSLHSNL* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01300 560 Gene3D - 9 431 IPR042099 -
Rops11g01300 560 Pfam AMP-binding enzyme 27 441 IPR000873 -
Rops11g01300 560 SUPERFAMILY Acetyl-CoA synthetase-like 7 553 - -
Rops11g01300 560 CDD AFD_class_I 176 541 - -
Rops11g01300 560 PANTHER ACYL-COA SYNTHETASE 7 550 - -
Rops11g01300 560 Pfam AMP-binding enzyme C-terminal domain 450 539 IPR025110 -
Rops11g01300 560 ProSitePatterns Putative AMP-binding domain signature. 176 187 IPR020845 -
Rops11g01300 560 Gene3D - 437 553 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01300 Rops-Chr11 19086920 19094048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01300 45 468 Monolignol Biosynthesis Gene Families AT3G21240 29.358 1.68e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01300 K14760 - gmx:100809925 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01300 11 19086920 19094048 Rops11g01300 11 19086920 19094048 ECH