Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01299 ATGTTTTTTTTTCCATGTGTGATTTGTGTTTTGGGGTGGGTTTCGTGTCGTGAGGATAGGTGGCAGCTGCAACAGAGTCCTATTTGTTGTAAGAAGAGGAGCCTATCTTTTTCCACTCTCTCTTCTCTCTCACCAACTCAACTCTGTTCCCTTTCTCTCCCATACACCAACAACAATTCAATTCACTTCAGGCCTCTACCATTTACCAAATTACAACACTTGCAAGATTTGGACACTGTAGTGCATGTGAATCAGGTCATGACTTCTTCTACTCATGTTCCGACAGATAATGAAGCCGATGGACAGCAGCAGTCAGAATCACAGACGCAGCCTTTATCTGCAAATGGAGTTTCTCATGTAGGTATCGATACTCATAATGTTCAGTATGCAGCACCTCCACAGCTTGGAACTGAGCATGCCATGGCACCACCTGCTTACCCATATCCAGATCCATACTACAGAAGCATCTTTACTCCTTATGATGCACAACCTTATCCCCCACATCCCTATGGTGGACATCCAATGGCCCAACTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCTACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGGAGGCAGTCCCGTGCTAAAGCTGAATCAGAAAATAAAGTTACAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTGAGGAGAGCAAGAGGGTGTGGAGGTCGGTTTCTGAATTCAAAGACAGATGAGAATCAACAAAATGAGGTTGCATCAACTGACAAGTCACAGTCCAATATCAATCTCAACTCAGATAAAACATCCTAA 852 0.4354 MFFFPCVICVLGWVSCREDRWQLQQSPICCKKRSLSFSTLSSLSPTQLCSLSLPYTNNNSIHFRPLPFTKLQHLQDLDTVVHVNQVMTSSTHVPTDNEADGQQQSESQTQPLSANGVSHVGIDTHNVQYAAPPQLGTEHAMAPPAYPYPDPYYRSIFTPYDAQPYPPHPYGGHPMAQLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVTRNRKPYLHESRHLHALRRARGCGGRFLNSKTDENQQNEVASTDKSQSNINLNSDKTS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01299 283 SMART cbf3 194 255 IPR001289 GO:0003700|GO:0006355
Rops11g01299 283 ProSiteProfiles NF-YA/HAP2 family profile. 195 255 IPR001289 GO:0003700|GO:0006355
Rops11g01299 283 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 197 252 IPR001289 GO:0003700|GO:0006355
Rops11g01299 283 PRINTS CCAAT-binding transcription factor subunit B signature 198 220 IPR001289 GO:0003700|GO:0006355
Rops11g01299 283 PRINTS CCAAT-binding transcription factor subunit B signature 229 252 IPR001289 GO:0003700|GO:0006355
Rops11g01299 283 MobiDBLite consensus disorder prediction 254 283 - -
Rops11g01299 283 ProSitePatterns NF-YA/HAP2 subunit signature. 200 220 IPR018362 GO:0003677|GO:0016602
Rops11g01299 283 Gene3D - 195 256 - -
Rops11g01299 283 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 84 276 IPR001289 GO:0003700|GO:0006355
Rops11g01299 283 MobiDBLite consensus disorder prediction 250 283 - -
Rops11g01299 283 MobiDBLite consensus disorder prediction 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01299 Rops-Chr11 19079184 19084573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01299 87 283 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.779 4.87e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops11g01299 CBFB_NFYA 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01299 K08064 - gmx:100809036 323.939