Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01294 ATGATGGCACTTTCTATGCATAAGGACTCATCCAATAATCAAATGGATTCTAGCAAGTATGTGAGGTATACACCTGAGCAAGTTGAGGCTTTGGAAAGGGTCTATGCTGAATGTCCAAAGCCTAGTTCTTTGAGGAGGCAACAGCTTATAAGGGAGTGCCCCATACTCTCTAATATTGAACCCAAACAGATCAAAGTTTGGTTTCAAAATCGAAGATGTCGTGAGAAGCAAAGAAAGGAAGCTTCTCGTTTGCAGACAGTGAATAGAAAGCTCAATGCAATGAACAAGCTATTAATGGAAGAAAATGACCGTTTGCAGAAGCAGGTCTCACATCTGGTTTATGAAAATGGATATATGAAGCAACAGATTCAGACTGCATCTGCTACTGCTGCCACCACAGATAATAGCTGTGAATCTGTGGTAATGAGTGGTCAGAACCAACAGCATAACCCAACTCAGCATCCTCAAAGGGATGCCAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGAGTAGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACAAAGGTTGCCGAGATTCTTAAAGATCGGCCATCATGGTATCGTGACTGTCGATGCCTCGATGTGTTGAGTATAGTCCCCACTGGTAATGGTGGCACAATAGAGCTCATGTACATGCAGACATATGCTCCCACAACATTGGCAGCACCAAGGGACTTTTGGACACTAAGATACACCACGAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACTTCTTCAACTGGTGGTCCCACTGGGCCTCCTCCTTCAAACTTCGTTAGAGCTGAAATGCTTCCTAGTGGTTTTCTGATTAGACCATGCGAGGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTGGATGTCTGGAGTGTCCCTGAAGTACTGAGGCCCCTATACGAATCATCAAAAATCTTGGCTCAGAAGTTGACCATTGCTGCCCTACAACATATAAGACAGATAGCACAAGAATCAAGTGGTGAAATTCAGTACGGTGGGGGACGCCAGCCTGCTGTCTTGAGGACGTTTAGTCAGAGACTTTGCAGGGGGTTTAATGATGCTGTGAATGGTTTTGTGGATGATGGTTGGTCACTGATGGGTAATGATGGGGTGGAAGATGTCACCATAGCCATAAACTCATCTCCCAACAAGTTTTTGGGGTCCAATTACAATTCATCAATGTTTCCAGCATTTGGAGGTGGGGTGCTGTGTGCCAAAGCATCAATGTTGCTGCAGAATGTTCCACCTGCTTTGCTTGTTCGATTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGTCTCAAGGCTAGTCCCTATGCAGTTCCTTGTGCAAGACCCGGTGGCTTCCCAAGCACCCAAGTCATTTTACCTCTTGCTCATACTATTGAGCATGAGGAGTTCCTGGAGGTAGTTCGTATAGAGGGTCATGCATTTTCCCCTGAAGATGTGGCATTGGCACGAGATATGTATCTATTGCAGCTTTGCAGTGGAGTTGATGAAAATGCGATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGATGAATCATTTGCGGATGATGCTCTTTTACTGCCTTCTGGTTTTCGTGTCATTCCATTGGATCCTAAAACAGATGGTCCTGCTGCAACTAGGACATTGGACTTGGCATCAACACTTGAAGTAGGAGGTGGCAATTCTCGTCCAGCTGGTGAAGCTGATTTGAATGGTTACAACCTTAGGTCGGTCCTTACTATTGCATTCCAATTTACTTTTGAGAACCATTTGCGGGACAATGTGGCTGCTATGGCTCGCCAGTATGTGCGTAGCGTTGTGGGATCTGTTCAGAGGGTTGCCATGGCTATCGCTCCCTCTAGGCTCAGCACTCAGATGGGGCCAAAGGCACTTCCCGGTTCACCAGAGGCTCTTACTTTAGCACGATGGATCAGTAGAAGCTACAGGATGCACGCTGGTGCTGAGCTTTTTAGAGTTGAGTCCACAGCTGGGGATGCAATCTTGAAGCAACTTTGGCACCATTCTGATGCAATCATGTGCTGTTCTGTAAAAACAAATGCATCACCGGTGTTCAGCTTTGCAAACCAGGCTGGACTAGACATGCTTGAAACTACTCTGGTTGCCCTTCAAGATATAATGCTTGATAAAGTCCTTGATGAAGCTGGCAGGAAGATTCTTTGCTCTGAGTTCTCCAAGATAATGCAACAGGGATTTGCATATCTGCCTGCAGGTATATGTGTATCAAGTATGAATAGGCCAGTGTCGTATGAGCAGGCCATTGCATGGAAAGTTCTGAATGATGATGACTCCAATCACTGCCTAGCCTTCATGTTCATGAACTGGTCTTTTGTTTGA 2544 0.4615 MMALSMHKDSSNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSHLVYENGYMKQQIQTASATAATTDNSCESVVMSGQNQQHNPTQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLDVLSIVPTGNGGTIELMYMQTYAPTTLAAPRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPPSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFLGSNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSTQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTDGPAATRTLDLASTLEVGGGNSRPAGEADLNGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQMGPKALPGSPEALTLARWISRSYRMHAGAELFRVESTAGDAILKQLWHHSDAIMCCSVKTNASPVFSFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01294 847 SUPERFAMILY Bet v1-like 415 602 - -
Rops11g01294 847 Pfam Homeodomain 19 77 IPR001356 GO:0003677
Rops11g01294 847 CDD homeodomain 19 79 IPR001356 GO:0003677
Rops11g01294 847 Gene3D - 201 384 IPR023393 -
Rops11g01294 847 ProSiteProfiles START domain profile. 158 359 IPR002913 GO:0008289
Rops11g01294 847 FunFam homeobox-leucine zipper protein ATHB-15 203 384 - -
Rops11g01294 847 CDD START_ArGLABRA2_like 162 378 - -
Rops11g01294 847 ProSiteProfiles 'Homeobox' domain profile. 14 78 IPR001356 GO:0003677
Rops11g01294 847 CDD bZIP 71 110 - -
Rops11g01294 847 SUPERFAMILY Bet v1-like 168 379 - -
Rops11g01294 847 SMART START_1 167 377 IPR002913 GO:0008289
Rops11g01294 847 FunFam Homeobox-leucine zipper protein REVOLUTA 19 74 - -
Rops11g01294 847 Gene3D - 10 85 - -
Rops11g01294 847 Coils Coil 74 108 - -
Rops11g01294 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 847 IPR044830 GO:0003700
Rops11g01294 847 SMART HOX_1 16 82 IPR001356 GO:0003677
Rops11g01294 847 Pfam MEKHLA domain 702 846 IPR013978 -
Rops11g01294 847 SUPERFAMILY Homeodomain-like 18 81 IPR009057 -
Rops11g01294 847 Pfam START domain 168 375 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01294 Rops-Chr11 19019446 19025590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01294 1 847 Homeobox Transcription Factor Family AT2G34710 79.813 0.0 1413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops11g01294 START 2e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01294 K09338 - gmx:100807428 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01294 11 19019446 19025590 Rops11g01294 11 19019446 19025590 ECH