Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01275 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGTCTTGACGCCGCTCCCTCCGCCGCCACTGCCGTAGTCGCCGCCGCACCTGCTGGTCCCCTCGTCCAGCATGATTCATCTTCAGCCGCTTCTGCCGTTGCCAACGGTGGCGCAGCCGCTCCTTCCGCTGCAGACCACTCGACTGGGAACGTCCCCGGACGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTTCGGAGCCTTTGCATGAAGGGAGACGCGTGCGGGTTCTTGCATCAGTACGACAAGGCGAGGATGCCGGTTTGCCGGTTTTTCAGGCAGTATGGGGAGTGTCGTGAGCAAGATTGTGTGTATAAGCACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCTCCTCCTGTTGAAGAAGTCCTTCAAAAGATCCAGCATTTATATTCGTATAATTATAATGCCTCTAACAAATTTTTCCAACAACGGGGTGCTAGCTATGCTCAACAAGCTGAAAAATCTCAGTTTCCTCAAGGAACTAATCCTACAAACCAAGGTGTGGCTGGAAAACCTGCAGAGTCAGGAAATGTCCAGCAGCAGCCTCAAGTTCAACAGTCTCAGCAACAGGTCAGCCAGAGCCAGGTGCAAAATCTTGCTAATGGCCAGCCCAATCAAGGCAATAGAACTGCAACCCCTTTACCTCAGGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAATTATCTGTACAACAAGGAGTATGGGCAACTCAGAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTGTGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTGGCCGGGGGGAACTGGAAATATGCTCACGGAACTGCACATTATGGGCGGAATTTCTCTGTTAAGTGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCCGTGAAGATAAGCAGAGATTGTCAGGAGCTGGAACCCTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAACCAGATAGTGAACTTATGGCTATCTCAGTTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGGGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCATGGTGTAGGGCCAGCTGGTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCGCCTCACATGCCTCTTGGGCGTGGAGCCAGACCAATGCCTGGAATGCAAGGTTTTAACCCTGTAATGATGGGTGATGGATTATCATATGGGCCTGTTGCACCTGATGGTTTTGGTATGCCTGATCTTTTTGGTGTGGGACCCCGAGCTTTTGCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGCCCCCCAGCAGCCATGATGTTTCGTGGGCGACCGTCACAACCTGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATCCTGGACGTGCTCCCTTTATGGGGGGAATGGGGGTTGCAGGTGCAAATCCACCAAGAGCTGGTAGGCCAGTCAATATGCCTCCAATGTTTCCACCACCTCCGCCCCCATCTCAGAATGCAAATCGTGTTGCCAGGAGAGATCAAAGAACTAATGATCGGAATGATAGGTACGGTTCAGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGGTGATGATGACATGCAGTATCACCAAGGATACAAGGCACAGCATGATGATCAGTATCCTGCTGGGAACAACTTTAGGAATGACGATAGTGAAAGTGAGGATGAGGCACCAAGGCGATCAAGACATGGAGAAGGAAAAAAGAAAAGGCGAAGCTCAGAAGATGTTAACACAAACTCTAATCACTAG 2094 0.4881 MEDSEGVLSFDFEGGLDAAPSAATAVVAAAPAGPLVQHDSSSAASAVANGGAAAPSAADHSTGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRQYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNASNKFFQQRGASYAQQAEKSQFPQGTNPTNQGVAGKPAESGNVQQQPQVQQSQQQVSQSQVQNLANGQPNQGNRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDCVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRAPFMGGMGVAGANPPRAGRPVNMPPMFPPPPPPSQNANRVARRDQRTNDRNDRYGSGSEQGKSQDMLSQSGGDDDMQYHQGYKAQHDDQYPAGNNFRNDDSESEDEAPRRSRHGEGKKKRRSSEDVNTNSNH* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01275 697 MobiDBLite consensus disorder prediction 583 601 - -
Rops11g01275 697 SUPERFAMILY CCCH zinc finger 70 101 IPR036855 GO:0046872
Rops11g01275 697 ProSiteProfiles YTH domain profile. 258 393 IPR007275 GO:0003723
Rops11g01275 697 SMART c3hfinal6 126 150 IPR000571 GO:0046872
Rops11g01275 697 SMART c3hfinal6 98 124 IPR000571 GO:0046872
Rops11g01275 697 SMART c3hfinal6 70 96 IPR000571 GO:0046872
Rops11g01275 697 MobiDBLite consensus disorder prediction 663 691 - -
Rops11g01275 697 Pfam YT521-B-like domain 337 392 IPR007275 GO:0003723
Rops11g01275 697 Pfam YT521-B-like domain 258 320 IPR007275 GO:0003723
Rops11g01275 697 CDD YTH 259 393 IPR007275 GO:0003723
Rops11g01275 697 MobiDBLite consensus disorder prediction 190 253 - -
Rops11g01275 697 MobiDBLite consensus disorder prediction 408 471 - -
Rops11g01275 697 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Rops11g01275 697 MobiDBLite consensus disorder prediction 622 640 - -
Rops11g01275 697 ProSiteProfiles Zinc finger C3H1-type profile. 70 97 IPR000571 GO:0046872
Rops11g01275 697 MobiDBLite consensus disorder prediction 607 621 - -
Rops11g01275 697 MobiDBLite consensus disorder prediction 432 450 - -
Rops11g01275 697 Gene3D ph1033 like domains 237 396 - -
Rops11g01275 697 MobiDBLite consensus disorder prediction 573 697 - -
Rops11g01275 697 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 37 680 IPR045168 -
Rops11g01275 697 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 65 126 - -
Rops11g01275 697 Gene3D - 63 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01275 Rops-Chr11 18652080 18669013 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g01275 YTH 1.1e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01275 K14404 - gmx:100802826 1155.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01275 11 18652080 18669013 Rops11g01275 11 18652080 18669013 ECH