Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01266 ATGAAGGAAGGGGGTGGTAGGAAGCAGGGTGCAGCTTCACCCTGTGCTGCATGCAAACTTCTAAGGAGAAGGTGTGCCCAAGATTGTGTTTTTGCTCCCTATTTCCCTGCTGATGAGCCCCAGAAGTTTGCAAATGTGCACAAGGTTTTTGGTGCCAGCAATGTCAACAAAATGCTTCAGGACCTACCAATGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAGGCCAATGCCAGAGTCCGAGACCCTGTTTATGGTTGTGTAGGGGCCATATCTTCTCTTCAGCAACAAATTGATGTGTTACAGACCCAATTGGCCCTGGCCCAAGCTGAGGTGGTTCACCTTAGGGTGTTCCAAAATAGATGCATTTCCAATCATGGACTTAGATCCACTAGCCCAACTAATAGTGGGTCCCCATCATCAAAAATCATGGATTCACAAGCTAAGCCTCTTTTTGACATGGACATGGTTGTGGACCAAGCCAACTATGGTGGTTCAATGTGGTAA 513 0.4737 MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVFQNRCISNHGLRSTSPTNSGSPSSKIMDSQAKPLFDMDMVVDQANYGGSMW* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01266 170 Coils Coil 93 113 - -
Rops11g01266 170 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Rops11g01266 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 134 - -
Rops11g01266 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01266 Rops-Chr11 18536393 18541127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01266 1 170 AS2 family AT1G31320 78.363 3.37e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops11g01266 LOB 1.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01266 - - gmx:100794219 313.538