Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01250 ATGGAAAGCGGTGGCGGTTTCGGAGGCGGAAGAGGAATTCAGCAACCGCCTGAGGAAGTGAGTTTGCAACCAGAATGGAGGCGGCGAGGTGGAAGAGGACAACCGGAATGTAGGCGATGGAGGTCGAGTGATTCTCCTTCCGAGCCTTGTACTTCTAATCCTGGTGGTGGTGATGATGCGAGGAAGGAGGAACTGGTTCTCCAACCAGAATGGAGACGCTCAAGGCCAAGTGCAAGTGTTTTTGAACCAGAATGGAGGCGATCAAGACCAACTGCATTTCCATGGAACCAAAATTTCGGTCAACGCAAACAGGGAGGTTCGAGTTCAAGTGCAAGTGTTCAGGATTATGCAGTTTCCAAATTTGAAAGACTACAAATATCGAAAGAATCAGCTACCTCATCTTGTACTCTTGAAAGAAAGGATAAAATTTCACCTATTCGGAGACCTGACAATGGTGGCACATTGGCGATTCTGATGAGCAGGCTTCGTGTCAATCATTTCCCTGTTAAGTTCAATCCAGAGAGTATAATTATGCATTATAATGTTACTGTCAAACCAAAGTTTTCCTCAAAATTTGGCCAGCCTCAGAAACTATCAAAGTCTGATCTGTCCATGATTAGAGAAAAATTGTTTTCTGATGATCCTGTGAGGTTACCCTTGGAGATGACTGCACACGATGGTGCAAAAAATATCTATAGTGCAGTACAACTACCGGAAGAGACTTTTACTGTGGAGATTTCTGAAGGAGAGGATGAAAGGACCATTTCATATAGTGTTACCATAGCACTTGTTAATAAACTCAGGCTTCGCAAGTTAGTGGACTATCTTTGTGGGCATACCCTCTCAATTCCTAGGGATATTTTACAAGGGATGGATGTGGTGATGAAAGAGAATCCAGCTAGGCGCACAATTTCTGTGGGACGACACTTTTATCCCACAAATCCTCCTTTGATAATGAAGGATCTTCATCATGGGAGAATTGCTGTTGGGGGGTTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTGGACTACTCAGTGTTGGCTTTCCGAAAGCAAATGCCAGTCTTGGATTTCTTGCATGAGTGTATTGATAACTTTAAATTGGATGAATTTGAAAACTTCAGGAAATATGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGTGTGACTCACCGTAAATCCAAACAGAAATACATTATTGCAAGATTAACACCTATGATTACAAGGTATGTCACTTTCCCCATTGATGATGCCAAGGGTTGGAACATCTCTAAGGATGTCAGTCTTCTATGCTTTTTTAAAGACAAATATGACAAGGACATTGTATATAAAGATATTCCTTGCTTAGATTTAGGGAAAGGCAACAAGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGTTGAGGGCCAAAGATATCCCAAAGAGCATTTGGATGGTGCTGCTGCAAAGACATTGAAAGCAATGTCACTAGCTCACCCAAATGAGAGGGAGTGTGCAATACAGAAGATGGTGCAGTCAGTTGATGGACCTTGCGGTGGTGATCGGATTCGAAATTTTGGAATGAGTGTCAACACGACCATGACAACCATCGAAGGACGTGTAATTGGCCCCCCAGAATTGAAATTGGGTGATCCAAATGGCAAGATTATCAAGATAACGGTGGATCTGGAGAAATGTCACTGGAACCTTGCTGGAAGATCCATGGTGGAAGGCAAAGCAGTTGAGCATTGGGGAATTCTTGATTTCACTAGTTTTGGGCCTTATAAGTACAAATTAAGAGGAAAGGAATTCATTCAAAAGCTTATGGGTAAATACAAAAAATTGGGTATATACATGCAAGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCGAGTCATGATTTGTTATCTGAATTACTTGAAAAAATTAATAACATTTGTAAATATAACCAATATCACCTACAATTTCTTCTCTGTGTGATGGCTAAAAAAAGTCCAGGTTATAAGTACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTGACACAATGCTGCTTGTCTCACGGTGCTAATGAAGGGGAGGACAAATTTTATACTAATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGTAGTAATGTGGAGCTCAGTAATAGACTCCCTTACTTTGAGGGTGAAGGACATGTTATGTTTGTAGGGGCTGATGTCAATCATCCTGGTACACGTGACACCAGGAGTCCATCAATTGCTGCTGTGGTTGCAACTGTTAATTGGCCTGCTGCAAATCGTTATGCAGCACGTGTTTGCCCTCAGTACAATCGAAGTGAGAAAATATTGAACTTTGGGGAGATTTGCCTTGAGCTTGTTGCATGTTATAGGAGGATGAATGGAGTCAGGCCAGAGAGAATTGTTGTTTTCCGTGATGGAGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTACTTGATTTGAAGAGAGCATTCCAAAGATTAAACTACTTCCCAACAATCACACTTATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCTGAGTGTTGGAGGGATGGGTCTTCCAGTGGCAATATTTTGCCCGGAACAGTTGTGGACACAAAAGTTATACACCCTTTTGAGTTTGACTTTTACCTTTGTAGTTATTATGGAAGCCTAGGTACAAGCAAGCCCACTCACTACCATGTCTTATGGGATGAGCACAAGTTTACATCTGATCAATTGCAGAAGCTCATATATGAGATGTGCTTCACCTTTGCGAGGTGCACTAAACCTGTATCTTTAGTCCCTCCTGTGTACTATGCTGACCTTGCTGCTTATAGAGGAAGATTATACCACGAAGCAAGGACTGGGATGCAATCTCTGAAGTCAGCAGCATCTTCATCTTCTAAAGATTCTTCATCGGTTTCATCAGCAGCTTCATTTGAACAGGGATTCTACAGGTTGCATGCTGATCTGGAAGACCTAATGTTCTTCATCTGA 3012 0.417 MESGGGFGGGRGIQQPPEEVSLQPEWRRRGGRGQPECRRWRSSDSPSEPCTSNPGGGDDARKEELVLQPEWRRSRPSASVFEPEWRRSRPTAFPWNQNFGQRKQGGSSSSASVQDYAVSKFERLQISKESATSSCTLERKDKISPIRRPDNGGTLAILMSRLRVNHFPVKFNPESIIMHYNVTVKPKFSSKFGQPQKLSKSDLSMIREKLFSDDPVRLPLEMTAHDGAKNIYSAVQLPEETFTVEISEGEDERTISYSVTIALVNKLRLRKLVDYLCGHTLSIPRDILQGMDVVMKENPARRTISVGRHFYPTNPPLIMKDLHHGRIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKQMPVLDFLHECIDNFKLDEFENFRKYVEEVLIGLKVSVTHRKSKQKYIIARLTPMITRYVTFPIDDAKGWNISKDVSLLCFFKDKYDKDIVYKDIPCLDLGKGNKKNYVPMEFCVLVEGQRYPKEHLDGAAAKTLKAMSLAHPNERECAIQKMVQSVDGPCGGDRIRNFGMSVNTTMTTIEGRVIGPPELKLGDPNGKIIKITVDLEKCHWNLAGRSMVEGKAVEHWGILDFTSFGPYKYKLRGKEFIQKLMGKYKKLGIYMQEPIWYEESSMKILASHDLLSELLEKINNICKYNQYHLQFLLCVMAKKSPGYKYLKWISETKVGIVTQCCLSHGANEGEDKFYTNLALKINAKLGGSNVELSNRLPYFEGEGHVMFVGADVNHPGTRDTRSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILNFGEICLELVACYRRMNGVRPERIVVFRDGVSEYQFDMVLNEELLDLKRAFQRLNYFPTITLIVAQKRHQTRFFPECWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDQLQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARTGMQSLKSAASSSSKDSSSVSSAASFEQGFYRLHADLEDLMFFI* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01250 1003 ProSiteProfiles Piwi domain profile. 658 957 IPR003165 GO:0003676
Rops11g01250 1003 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 161 958 - -
Rops11g01250 1003 Pfam N-terminal domain of argonaute 161 295 IPR032474 -
Rops11g01250 1003 Pfam Argonaute linker 1 domain 305 356 IPR014811 -
Rops11g01250 1003 SMART DUF1785_2 304 357 IPR014811 -
Rops11g01250 1003 MobiDBLite consensus disorder prediction 22 43 - -
Rops11g01250 1003 CDD Piwi_ago-like 522 955 IPR045246 -
Rops11g01250 1003 Pfam Piwi domain 659 953 IPR003165 GO:0003676
Rops11g01250 1003 Gene3D - 540 721 - -
Rops11g01250 1003 SMART PAZ_2_a_3 358 497 IPR003100 GO:0005515
Rops11g01250 1003 MobiDBLite consensus disorder prediction 1 85 - -
Rops11g01250 1003 SUPERFAMILY PAZ domain 353 513 IPR036085 GO:0005515
Rops11g01250 1003 ProSiteProfiles PAZ domain profile. 358 474 IPR003100 GO:0005515
Rops11g01250 1003 Pfam PAZ domain 362 484 IPR003100 GO:0005515
Rops11g01250 1003 CDD PAZ_argonaute_like 358 473 - -
Rops11g01250 1003 SMART Piwi_a_2 658 956 IPR003165 GO:0003676
Rops11g01250 1003 FunFam Protein argonaute 7 352 478 - -
Rops11g01250 1003 Gene3D - 728 1003 IPR036397 GO:0003676
Rops11g01250 1003 SUPERFAMILY Ribonuclease H-like 650 957 IPR012337 -
Rops11g01250 1003 Gene3D paz domain 352 478 - -
Rops11g01250 1003 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01250 Rops-Chr11 18352496 18357130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01250 162 960 Eukaryotic Initiation Factors Gene Family AT1G48410 37.116 2.23e-146 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01250 K11593 - gmx:100783571 1623.99