Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01246 ATGGAGGATCAGGCTGTTTTAGTTGGTGGAGAATCTGTTAATGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAAGATGAAGAAGCATGGAAAGAAACTGAGGAGCCTGTGGTGGAAGAAGAGTTGAAGGATGAGCTTGATGAATTTTCAGTAAAGATGTTCTTTAAAGGGTTATCAATAGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTTTTCATGGAAAGATCATCAAGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCAGAGGAGCCATTAGTTGACTACTTGGCACTCATGGATGGCATGCTGGAAGCTGTGCAGAACAAGATCCGCCATGTTTATGCTTTCACAGATTCTGAGTTGTTATACGATCAGATAACATCTGAGAAAGATTTGGACATGCCACTTTTGATGGCACTGAGAGAAAGGATACAGGAACATGCCAATAATTTTGAAATTTTTGTTCTGAAGCTTACATCCAGTACTGATCTTGAGCAGCCACTGCAGTTGGCCAAAGTAGCTATTGGACTTGTCACTTTCCCTGTAAATGGTGAGAGATTACTGGAGAACTGTTCTATTTGTTGTGATGACAAGCCAGTGCCAATTATGATTAAGTTGAAATGTTCACACACATTTTGTTCACATTGCTTGAGGTCCTATGCTGATGGTAAAGTACAATCTTGTCAAGTGCCTATAAGATGCCCTCAACCAGGATGCAAATATTGCATCTCTACAACTGAGTGCAAGTCTTTTCTTCCATTCACCTCCTTTGAATCTTTGGAGAAAGCCCTTTCAGAAGCAGATATTGTACACTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCGTGAATGTTTATCAACTAGGGCCAGTTCATCAAGTCAGTCAAACAATTCTTGTTTCGAGTGCCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAATACCAAAATCTGCCAGAGGAGGAGAGAGACGCTTCTGACATTACCTTGCATCGTCTTGCTCAAAATAAAAGGTGGAAGCGTTGTCAGCAGTGCCGTAGGATGATTGAACTTACTCAAGGTTGCTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACAGGGAGGGCCAACAGACATGTCAGTGTGCATTTTGGGATGAAGACAACTCTGAAGATTCCTTGACACATTCTCTTCACGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCTCCATGATCATGGATGCATACTCAGACCAAGAAAGATCACAACTCGCACTTATACAAAGGTTCCTGGCTGGTGGTTTTAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCCCGGTGTACAGATTCCTATGCAGACCCCATGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTCGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAATGA 1560 0.4199 MEDQAVLVGGESVNVGREEEEDEFCSCCEDEDEEAWKETEEPVVEEELKDELDEFSVKMFFKGLSIAGVENSSSGFSGIGVFMERSSSLPAIRVQKKLDFYAEEPLVDYLALMDGMLEAVQNKIRHVYAFTDSELLYDQITSEKDLDMPLLMALRERIQEHANNFEIFVLKLTSSTDLEQPLQLAKVAIGLVTFPVNGERLLENCSICCDDKPVPIMIKLKCSHTFCSHCLRSYADGKVQSCQVPIRCPQPGCKYCISTTECKSFLPFTSFESLEKALSEADIVHSDRIYCPFPNCSVLLDPRECLSTRASSSSQSNNSCFECPVCQRFICVDCEVPWHSSMSCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYREGQQTCQCAFWDEDNSEDSLTHSLHESEQWAWETFNSLSMIMDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYADPMKDLHQLPWLERFVSVISDNYYEDYIQ* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01246 519 CDD BRcat_RBR_unk 286 347 - -
Rops11g01246 519 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 466 IPR031127 GO:0004842|GO:0016567
Rops11g01246 519 FunFam RBR-type E3 ubiquitin transferase 201 285 - -
Rops11g01246 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 286 IPR013083 -
Rops11g01246 519 ProSiteProfiles TRIAD supradomain profile. 201 419 IPR044066 -
Rops11g01246 519 ProSiteProfiles Zinc finger RING-type profile. 205 249 IPR001841 -
Rops11g01246 519 Gene3D - 341 466 - -
Rops11g01246 519 SUPERFAMILY RING/U-box 203 278 - -
Rops11g01246 519 CDD Rcat_RBR_unk 370 406 - -
Rops11g01246 519 FunFam RBR-type E3 ubiquitin transferase 342 467 - -
Rops11g01246 519 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
Rops11g01246 519 SUPERFAMILY RING/U-box 357 421 - -
Rops11g01246 519 FunFam RBR-type E3 ubiquitin transferase 57 192 - -
Rops11g01246 519 Pfam Reverse transcriptase-like 71 172 IPR002156 GO:0003676|GO:0004523
Rops11g01246 519 SUPERFAMILY Ribonuclease H-like 73 175 IPR012337 -
Rops11g01246 519 SMART ibrneu5 272 344 IPR002867 GO:0008270
Rops11g01246 519 SMART ibrneu5 354 413 IPR002867 GO:0008270
Rops11g01246 519 Gene3D - 57 191 IPR036397 GO:0003676
Rops11g01246 519 Pfam IBR domain, a half RING-finger domain 285 344 IPR002867 GO:0008270
Rops11g01246 519 Pfam IBR domain, a half RING-finger domain 364 413 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01246 Rops-Chr11 18304809 18311629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01246 30 404 C3H Transcription Factor Family AT2G19610 25.128 1.26e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01246 - - gmx:100783040 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01246 11 18304809 18311629 Rops11g01246 11 18304809 18311629 ECH