Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01239 ATGACTGATGATACCGTGTGTTCTCCGAATGATAAGGGCTTGTCGCTGAGTCCTAATCTTGATATCGCGATAGATGATGGATCTCCAAACAGTGAGCACCTACTCGAGGTTGAGAATGACTGTGGTCAGTTATTTGAGATTGATGGAAGTGAACATGAAAATGGGAGGGATGAAACAACAGTAGTTGATAGTCATAGTGGAGAATCTCAACAAAAAGACTACCCCCCACCAGTTGTGGGAATGGAGTTTGATACTTATGATGACGCCTACAACTTTTACAATAGCTATGCCAAGGAAATTGGATTTGCTATTCGGGTTAAATCTTCATGGACCAAACGTAACAGCAAAGAGAAGCGTGGTGCGGTGCTGTGCTGCAACTGTGAGGGTTTCAAAACAATTAAAGAAGCAAATAGTCATAGGAAAGAAACTAGAACAGGCTGTCTAGCAATGATTAGGTTGAGATTAGTGGAATCTAACAGGTGGAAGGTGGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAGAGAGCACAGAACTCTAAATCACATAAGAGGATGGAGAGTGGGGCCAAAAGAAAAGTTGAGCCAACTCTGGATGTTGAAGTACGAACAATCAAGTTATATCGAATGCCAGTTGGAGATGTGTCAGCTCTTGATGATCTTGAGTCACACGATTCAAGCCCATTACTGAAGACAAGATGCTCCTATGAGTTGCAACTCTCTAAATTGTACACAAATGCGATATTCAGGAGGTTCCAAGATGAGGTGGTGGTGATGTCCTCTTGTTTCAGTGTCACACCAATTCATACAAATGGGTGTATAGTGACATACATGGTAAAAGAACGTCAAGGGGAAGAACCTGAAAGAGATGCTAGGCATTTTGAAGTCATGTATGATAAAGCTGGTGCAGAGGTACGCTGCAGTTGCAGTTGCTTTAACTTCAAAGGCTACCTGTGCAGACATGCCTTGTATATCCTTGATTATAATGGTGTGGAGGAAATTCCATGTCAATATATATTGTCAAGATGGAGGAAGGATTTTAAGCGATTAGGCTTCTCTTCCTCCAACGACGGTTTCTACATCATGTCTACTCCAAATCAGTCATGCCCTTCTGTAAAGAACGTTCTTCTTCTTGATTCTGATGGAAAACGTGTGGCGGTTAAGTATTTCTCTGATGACTGGCCAACCAATAGTGCAAAGGAAACTTATGAAAAACTTGTGTTCACCAAGACTCAGAAGACCAATGCCCGCACCGAAGCTGAGATTGCAATGTTTGAGAATAACATTGTTGTTTACAAGTTTGTCCAAGATCTTCACTTCTTTGTTACCGGGGGTGATGATGAAAACGAGCTTATCTTAGCCACGGTTCTGCAGGCATTTTTTGATTCTGTTGGCCTCCTGCTCAGAGGCAATGTGGACAAAAAGGAAGCACTTGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGTATCATTCTTGAAACTGATCCAAATGTTATAGCTGGAAAAGTTGCAAGTAATAGTATAGATTCTGGAGCTCCTTTGTCTGAACAGACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGATCCCTTCTTAAATAA 1635 0.4171 MTDDTVCSPNDKGLSLSPNLDIAIDDGSPNSEHLLEVENDCGQLFEIDGSEHENGRDETTVVDSHSGESQQKDYPPPVVGMEFDTYDDAYNFYNSYAKEIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEANSHRKETRTGCLAMIRLRLVESNRWKVDEVKLEHNHSFDPERAQNSKSHKRMESGAKRKVEPTLDVEVRTIKLYRMPVGDVSALDDLESHDSSPLLKTRCSYELQLSKLYTNAIFRRFQDEVVVMSSCFSVTPIHTNGCIVTYMVKERQGEEPERDARHFEVMYDKAGAEVRCSCSCFNFKGYLCRHALYILDYNGVEEIPCQYILSRWRKDFKRLGFSSSNDGFYIMSTPNQSCPSVKNVLLLDSDGKRVAVKYFSDDWPTNSAKETYEKLVFTKTQKTNARTEAEIAMFENNIVVYKFVQDLHFFVTGGDDENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQALATAREHLARSLLK* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01239 544 CDD Zeta-COP 375 510 - -
Rops11g01239 544 ProSiteProfiles Zinc finger SWIM-type profile. 296 332 IPR007527 GO:0008270
Rops11g01239 544 MobiDBLite consensus disorder prediction 49 63 - -
Rops11g01239 544 FunFam Coatomer subunit zeta-2 368 514 - -
Rops11g01239 544 Pfam SWIM zinc finger 306 325 IPR007527 GO:0008270
Rops11g01239 544 Pfam Clathrin adaptor complex small chain 374 512 IPR022775 -
Rops11g01239 544 Gene3D - 366 514 - -
Rops11g01239 544 SUPERFAMILY SNARE-like 374 513 IPR011012 -
Rops11g01239 544 MobiDBLite consensus disorder prediction 172 195 - -
Rops11g01239 544 SMART 26again6 307 334 IPR006564 GO:0008270
Rops11g01239 544 Pfam FAR1 DNA-binding domain 91 175 IPR004330 -
Rops11g01239 544 MobiDBLite consensus disorder prediction 49 76 - -
Rops11g01239 544 PANTHER ZETA-COAT PROTEIN 369 543 IPR039652 GO:0006890|GO:0030126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01239 Rops-Chr11 18204417 18214567 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops11g01239 Clat_adaptor_s 4.2e-21 CL0431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01239 K17604 K20472 gmx:100796448 403.29