Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01238 ATGGAAGAGACCTCTCTCTGCTGCGAAGATTTTCCAGATGGGGAATGCATTGAAGTTCATAAAGATGAAGATGCTACAATAATTGAATTAGATTGTCAAAATGATTTTTCTGAAGGAAGAAAGGAATTTGTTGCACCTGCTGTTGGACTGGAGTTTGAGTCATATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGATTTCGTGTTAGGGTGAAGAATTCATGGTTCAAGCGAAATAGCAGAGAAAAATACGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAATAAAAGATGTTAACCATTTGAGAAAAGAGACAAGAACTGGTTGTCCTGCAATGATAAGGATGAGGTTGGTGGAGTCTCAGAGATGGAGGATACTTGAGGTTACACTTGAGCATAACCATGTGTTAGGTGCTAAGCTATACAAATCAGTTAAGAAGATGGGAATTGGAACTAAAAGGAAGTCATTGCCTAGTTCTGATGCTGAGGTACAAACAATTAAGTTATACCGTGCACTTGTGATAGATGCAGGAGATATTGAATCAAGAAGCTCGAGCCCCTTGCTGAAAACCAGATGTTCCTTTGAATTGCAGCTCTCTAGAATGTACACAAGAGAAATATTCATGAAGTTCCAATTTGAAGTGGAAGAAATGTTTTCTTGTTTTGGTACAACACAATTGCATGTGGATGGTCCCATCATAATTTTCTTGGTTAAGGAGCGTGTTTTGATTGATGGAAACAGAAGGGAGATTAAGGATTTTGAAGTTCTGTACAGTAGGACAGCAGGTGAAGTTCGTTGCATCTGTAGCTGCTTTAACTTTTATGGATATCTATGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTGGAAGAGATACCTCGCAAATACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTATATGTTCCTGATCACAGCTCTGATAGTGCTGACAATACTGACCGTATTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTGGTGGAGGAGGGGATAATTTCTCTAGACCATTTCAATGTAGCATTGCAGACTTTTGAAGAATCACTGAGTAAGGTTCATAATGTAGAACAGAGACAGGAGTAG 1137 0.3958 MEETSLCCEDFPDGECIEVHKDEDATIIELDCQNDFSEGRKEFVAPAVGLEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRILEVTLEHNHVLGAKLYKSVKKMGIGTKRKSLPSSDAEVQTIKLYRALVIDAGDIESRSSSPLLKTRCSFELQLSRMYTREIFMKFQFEVEEMFSCFGTTQLHVDGPIIIFLVKERVLIDGNRREIKDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPRKYILSRWKKDYKRLYVPDHSSDSADNTDRIQWSNQLFRSALQVVEEGIISLDHFNVALQTFEESLSKVHNVEQRQE* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01238 378 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 158 IPR031052 GO:0006355
Rops11g01238 378 SMART 26again6 271 298 IPR006564 GO:0008270
Rops11g01238 378 ProSiteProfiles Zinc finger SWIM-type profile. 260 296 IPR007527 GO:0008270
Rops11g01238 378 Pfam SWIM zinc finger 247 292 IPR007527 GO:0008270
Rops11g01238 378 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01238 Rops-Chr11 18199029 18202648 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops11g01238 FAR1 2.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01238 - K17604 gmx:100796448 367.081