LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g01233	ATGGGTGAAAGAAGAATACTAGTACCATTGGTGGTTTTGTTCAGCTCTTTGTTGTTTTCATTAGCTCAAGATGTTACAAATGATTTTAGAGTCCTGATATCTCTAAGGGATTCCTGGAAGAGCTCAACTCCTAGTTGGGTTGGTTCAGATCCTTGCAACGGTTGGGATGGTATTAAATGCCAAAACTCACGTGTTACTACCATATCATTACCAGGCACTGGTTTGACTGGCCAGCTTCCAAGAGATATTGGATCCCTCTCTGAGTTGGACACTTTGGATCTCTCAGACAATAAGGGACTAACAGGACCGCTTCCACAAGAAATTGGAAATTTGAAGAAGCTAACAAAATTAACTCTTGTTGGTTGTGGTTTTTCTGGTCATATTCCAGACGAAATAGGATATCTACAACAGCTCGTTTACTTATCTTTGAACTCCAACAGCTTTGTTGGAACAATTCCCCCTTCAATTGGCAATCTATCAAATCTTTTTTGGCTGGATTTAACTGACAATCAGCTTGAGGGACCGATCCCAGTATCTAGTGGCACTAGCCCTGGTCTTGATATGTTACTCAACACACTTCACTTTCATCTTGGGAAGAATAAGCTTTCAGGAGAAATTCCTTCTCAACTTTTTAGCTCAGAAATGTCTCTGATACATGCGATTTTTGAGAGCAACAAACTAGTTGGCAACATTCCGGATACGCTTGGACTTGCTAAGAACCTAACGGTGGTGCGCTTTGAAAATAATTTATTGGATGGACATGTGCCTCGGAATCTCAACAACCTTACAAGTGTTACAGACCTGTTGTTGTCCAACAATAAGCTGCAAGGTTCCTTGCCAAACCTTACTGGGATGAACTCCCTAATGTACTTGGATTTGAGCAACAATAGCTTTGATAAGTCAGATTTTCCACCATGGCTTTTAAATCTGACGGATTTAACAACCTTACAAATGGAGAGTGTGAACCTTTATGGGAAAATTCCTGCTTCTTTGTTTAGCCTTCCCAATTTACAAAATGTTGTGCTAAAAAACAACCACCTTCATGGAACCTTGGATATTGGCAACAACTACAGCAGCAAACTGAAACTTATTGATTTGCAGTCCAATTCAATTGATGAATTCGAGCAACGAAATGAAGTCCCTAATATCATGATAATACTTGTGAACAACCTAATTTGTCAAGAAACAGGAGCTACAGGAACTTATTGCACCAGGCAAACTATCTTAGATACAAAACCACAAAAGAACTGTGCGACAGATACTTGCAGTTCACCTCAGATTCTCAGTCCCAAGTGCAAGTGTGCATATCCATATACAGGAACTCTAACATTCAGAGCACCTTCCTATTTTGACTGGAGAAATAAAAATTCCCTGGAGGAAATTCTTTTGCATGATTTTCAATCCGATCAGCTGCCTGTGGATTCAGTATCTTTGATCAGTAGTTCTGAAGATCTATTTAATGATTTTGTGTTTATCATACAAATCTTCCCATCAGGCCAAGATTATTTCAACCAACAAGACATTTCTAGTATATGCTCTTTGCTTGGCAACCTAACTACTAATGGGCCATACACTTTTGTTGCTGGAAACCAAATTCAAGGACCAAAAATGGAGTCAAGTAGCTCATCAGGCCATGGCATAATTATTGGAGCAGCAGTTGGTGGTGGTTCTGTCCTTGTGTTATTATTCCTTGCAGGTGTTTATTCTTTCCGCCAAAAGAGAAGGGCAGAAAGAGCAATTTCTATAAGCAATCCTTTTGGACACTGGGATCCAAATAAAAGCAACTGTGGCATCCCTCAGTTAAAAGCAGCAAGGCAGTTCTCTTTCAAAGAACTGCAGAAATACACAGACAATTTTTCTCAAGTCAATGATATTGGATCAGGGGGTTATGGAAAGGTTTATCGGGGAACTCTTCCCAATGGGAAACTAATAGCCATAAAACGAGCTCAAAAAGAATCAAAGCAGGGAGCACTAGAATTTAAAGCTGAGATTGAACTCCTTTCAAGGGTCCACCACAAGAATCTGGTAAGCCTTGTAGGATTCTGCTTTGAACGAGAAGAACAAATGCTGGTTTACGAGTTTATTCCAAATGGAACTTTGAAGGATACTCTCTCAGGGAAATCAGAAATTGTATTGAGCTGGAGTAGAAGAATAAAAGTAGCCCTTGGTGCTGCCAGGGGTTTGGCTTATCTTCATGAACATGCCGATCCTCCTATTATACACAGGGACATCAAATCAAACAACATTTTGCTGGATGAGAACTTCAATGCAAAAGTTGCTGATTTTGGTCTCTCGAAGCCTATCTTTGATGATAAAGATCATGTCACCACTCAAGTTAAAGGAACAATGGGCTACTTGGATCCAGATTATTATATTAGTCAGCAGTTGACTGAAAAGAGTGATGTTTATAGTTTTGGAGTGCTAATGCTGGAGCTGATAACTGCAAGAAAGCCAATAGAACGAGGGAAGTACATTGTGAAAGTGGTCAGGAACACAATTGATAAGACAAAAGACTTGTATGGTCTTCAAGAAATTATTGACCCAGCCATTGGTTCAGGACCAACACTGAAGGGTTTTGTGAAGTTTGTGGACCTTGCAATGAGTTGCGTTGAAGGGTCAGGAGCTGACAGGCCTGCAATGAGTGAAGTGGTTAAAGAAATTGAAGACATAATGCAGTCTTCTGGTTTGAACCTTAAATCTGAATCAGCAGCATCCACTTCATCTAGTTATAAATATCACGAGGTAAGTATAGGGAGTCCCTACCATCCTCACAGCAATGAATCCTTTGATTCAAGTACAGAACATTTACGTCCAAAAAATGAGTCTAGTTAG	2832	0.399	MGERRILVPLVVLFSSLLFSLAQDVTNDFRVLISLRDSWKSSTPSWVGSDPCNGWDGIKCQNSRVTTISLPGTGLTGQLPRDIGSLSELDTLDLSDNKGLTGPLPQEIGNLKKLTKLTLVGCGFSGHIPDEIGYLQQLVYLSLNSNSFVGTIPPSIGNLSNLFWLDLTDNQLEGPIPVSSGTSPGLDMLLNTLHFHLGKNKLSGEIPSQLFSSEMSLIHAIFESNKLVGNIPDTLGLAKNLTVVRFENNLLDGHVPRNLNNLTSVTDLLLSNNKLQGSLPNLTGMNSLMYLDLSNNSFDKSDFPPWLLNLTDLTTLQMESVNLYGKIPASLFSLPNLQNVVLKNNHLHGTLDIGNNYSSKLKLIDLQSNSIDEFEQRNEVPNIMIILVNNLICQETGATGTYCTRQTILDTKPQKNCATDTCSSPQILSPKCKCAYPYTGTLTFRAPSYFDWRNKNSLEEILLHDFQSDQLPVDSVSLISSSEDLFNDFVFIIQIFPSGQDYFNQQDISSICSLLGNLTTNGPYTFVAGNQIQGPKMESSSSSGHGIIIGAAVGGGSVLVLLFLAGVYSFRQKRRAERAISISNPFGHWDPNKSNCGIPQLKAARQFSFKELQKYTDNFSQVNDIGSGGYGKVYRGTLPNGKLIAIKRAQKESKQGALEFKAEIELLSRVHHKNLVSLVGFCFEREEQMLVYEFIPNGTLKDTLSGKSEIVLSWSRRIKVALGAARGLAYLHEHADPPIIHRDIKSNNILLDENFNAKVADFGLSKPIFDDKDHVTTQVKGTMGYLDPDYYISQQLTEKSDVYSFGVLMLELITARKPIERGKYIVKVVRNTIDKTKDLYGLQEIIDPAIGSGPTLKGFVKFVDLAMSCVEGSGADRPAMSEVVKEIEDIMQSSGLNLKSESAASTSSSYKYHEVSIGSPYHPHSNESFDSSTEHLRPKNESS*	944

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g01233	943	FunFam	Leucine-rich repeat protein kinase family protein	182	281	-	-
	Rops11g01233	943	SUPERFAMILY	L domain-like	59	411	-	-
	Rops11g01233	943	Gene3D	Ribonuclease Inhibitor	183	397	IPR032675	-
	Rops11g01233	943	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	695	903	-	-
	Rops11g01233	943	Gene3D	Transferase(Phosphotransferase) domain 1	695	913	-	-
	Rops11g01233	943	SMART	serkin_6	619	896	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g01233	943	MobiDBLite	consensus disorder prediction	928	943	-	-
	Rops11g01233	943	PANTHER	RECEPTOR-LIKE PROTEIN 55	39	891	-	-
	Rops11g01233	943	MobiDBLite	consensus disorder prediction	915	943	-	-
	Rops11g01233	943	Pfam	Protein tyrosine and serine/threonine kinase	622	830	IPR001245	GO:0004672\|GO:0006468
	Rops11g01233	943	ProSitePatterns	Protein kinases ATP-binding region signature.	625	647	IPR017441	GO:0005524
	Rops11g01233	943	FunFam	Leucine-rich repeat family protein	27	181	-	-
	Rops11g01233	943	SUPERFAMILY	Protein kinase-like (PK-like)	605	921	IPR011009	-
	Rops11g01233	943	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	739	751	IPR008271	GO:0004672\|GO:0006468
	Rops11g01233	943	ProSiteProfiles	Protein kinase domain profile.	619	891	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g01233	943	Gene3D	Phosphorylase Kinase; domain 1	591	694	-	-
	Rops11g01233	943	CDD	STKc_IRAK	625	890	-	-
	Rops11g01233	943	FunFam	Leucine-rich repeat protein kinase family protein	588	694	-	-
	Rops11g01233	943	Gene3D	Ribonuclease Inhibitor	16	182	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g01233	Rops-Chr11	18157499	18164138	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g01233	10	932	Receptor kinase-like Gene Family	AT5G49760	54.295	0.0	901

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Rops11g01233		PK_Tyr_Ser-Thr	3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g01233	-		-	gmx:100810323	1330.47