Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01216 ATGGAAAAGAGGCGAAAAGAAGAGAGGGAAGAAAATAGAAAAAGCAAAAATTCAAAAGAAGGCTTCCCTCGCTGGCGAAAATGGATTGGGGAAACCCTATCCCTTCCCTTTCCCCAAATCGCACCACTGCCCATGGCGCAGCTTCCCTGTGACGCTGATGGCCTCTTATCATGCCTTCTGGGTACACGTGTGGTTTTTGGCTGTTGTCAATCCAGTGAGAAGCTATCTGTAATTAGTAATGAAGTTAACAGAGAAATGAGGGGTATTATAGAATCACTCCAGCGCCAGGCTGAACAGGTGCAGGAGAATTCGGAAGAGTCAAGTGATAAAAATGATGAGAATCTGAATGATGGAACAGAAGTTTCAAAGCCCAGTGATTCAAATTCGGGTCCTTATCACCAAGATCCAACAACCCCTCAACCACAAGAAGCTGCTTCACGAACCCACAAAAAAAAGAAATCAAGTATCAACTGCCAAACGGCATCAGGAAACATGTCTCAGTACCGCAGGGATGAAATGGAGTATGTTGCAGATGATAATGAAATGGCAGAAGTAGAAGAAGATATGTACTTCCGTGGCAGAGCATTTGGTGAATCAGATTCAGATGATGATGACGATGATGAATATGACCCTTTGGAAAACCGAATAACAGATACCACTGCTGCTGAAGCTAGGAGAGGAAAGGATATCCAAGGTATACCTTGGGATAGACTGAGCATTAGTCGTGAGAAATATAGACAAACTAGACTAGAGCAGTACAAGAATTATGAAAATATACCACAATCTGGGGAACTTTCAGAGAAGGAATGTAAACCAACAGATAAAGGGGAAATTTATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAATTGAGGAACTTAGTTTGGTCGACATCAAAGCATGATGTATATCTTGTTTCACATTACTCAATTGTTCACTGGTCTTCATTAAGTTCTAAGAGATCTGAAGTCTTGAACGTATCAGGGCATGTAGCTCCGCGTGAGAAACATCCTGGAAGCCTCTTGGAAGGTTTTACTCAGACGCAAATTAGTACGCTGGCTGTACGGAATAACTTGTTGATTGCCGGAGGCTTTCAAGGAGAAATTATTTGCAAGTACTTAGATCGACCTGGGGTTAGCTTTTGTTCCCGAACTACTTATGATGACAATGCGATCACGAATGCTGTTGAGATTTATGAGCATCCCAGTGGATCTGTTCATTTCATGGCTTCAAACAATGACTGCGGTGTTAGAGACTTTGATATGGAGAGATTTCAGCTTTTGAAGCATTTCTGCTTTCCTTGGCCAGTAAATCATACTTCATTGAGCCCTGATGGGAAACTACTGGTAATTGTTGGTGACAACCCAGATGGGATACTAGTGGATTCTCAAACTGGAAAGACTATCACACCTTTATGCGGACACTTGGATTATTCATTTGCATCTGCATGGCATCCCGATGGCCGCATTTTTGCCACTGGGAACCAAGACAAAACATGTCGTGTTTGGGATGTTCGGAACTTGTCAAAGTCTGTTGCTGTTCTTAAGGGCAACCTTGGGGCTATACGGTCGATACGATTCACATCTGATGGACAGTTCATGGCAATGGCTGAGCCAGCTGACTTTGTGCATGTCTATGACACAAAGCATGGGTTTGAGAAGGAACAGGAGATCGATTTTTTTGGGGAGATCTCTGGTGTATCTTTTAGCCCCGACACAGAATCACTTTTTATTGGTGTCTGGGATCGCACCTATGGAAGCCTTCTTCAGCTCAATCGACGCAGAAACTATATGTATCTTGACTGCTTGTAA 1833 0.4272 MEKRRKEEREENRKSKNSKEGFPRWRKWIGETLSLPFPQIAPLPMAQLPCDADGLLSCLLGTRVVFGCCQSSEKLSVISNEVNREMRGIIESLQRQAEQVQENSEESSDKNDENLNDGTEVSKPSDSNSGPYHQDPTTPQPQEAASRTHKKKKSSINCQTASGNMSQYRRDEMEYVADDNEMAEVEEDMYFRGRAFGESDSDDDDDDEYDPLENRITDTTAAEARRGKDIQGIPWDRLSISREKYRQTRLEQYKNYENIPQSGELSEKECKPTDKGEIYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSHYSIVHWSSLSSKRSEVLNVSGHVAPREKHPGSLLEGFTQTQISTLAVRNNLLIAGGFQGEIICKYLDRPGVSFCSRTTYDDNAITNAVEIYEHPSGSVHFMASNNDCGVRDFDMERFQLLKHFCFPWPVNHTSLSPDGKLLVIVGDNPDGILVDSQTGKTITPLCGHLDYSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGQFMAMAEPADFVHVYDTKHGFEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQLNRRRNYMYLDCL* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01216 610 Gene3D - 394 605 IPR015943 GO:0005515
Rops11g01216 610 MobiDBLite consensus disorder prediction 102 119 - -
Rops11g01216 610 MobiDBLite consensus disorder prediction 194 225 - -
Rops11g01216 610 Coils Coil 83 110 - -
Rops11g01216 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 514 - -
Rops11g01216 610 SMART WD40_4 515 554 IPR001680 GO:0005515
Rops11g01216 610 SMART WD40_4 472 511 IPR001680 GO:0005515
Rops11g01216 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 520 IPR001680 GO:0005515
Rops11g01216 610 Pfam WD domain, G-beta repeat 475 511 IPR001680 GO:0005515
Rops11g01216 610 MobiDBLite consensus disorder prediction 1 21 - -
Rops11g01216 610 SUPERFAMILY WD40 repeat-like 299 591 IPR036322 GO:0005515
Rops11g01216 610 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 170 609 - -
Rops11g01216 610 MobiDBLite consensus disorder prediction 95 165 - -
Rops11g01216 610 MobiDBLite consensus disorder prediction 120 144 - -
Rops11g01216 610 FunFam WD-40 repeat family protein 392 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01216 Rops-Chr11 17989328 18005413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01216 456 591 Miscellaneous Gene Families AT5G08390 28.467 8.17e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01216 - - gmx:100788712 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01216 11 17989328 18005413 Rops11g01216 11 17989328 18005413 ECH