Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01212 ATGGATCCTGGCAATGGAGGAAACAGTCTCACCAACAACTCTAATCTCACCTCAAAACAACGGTTACGGTGGACACATGAGCTGCATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGCGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACCTGGCTTAACCATTTACCATGTCAAAAGCCATTTACAGAAATACCGACTAGCAAAATACCTACCTGACTCTTCGTCCGATGAAGGGAAAAAAGCTGACAAGAAAGAAACAGGGGATGCGCTTTCCAACCTAGATGGTTCATCTGGGATGCAGATTACTGAAGCGCTAAAGCTTCAAATGGAGGTGCAGAAGCGACTACATGAACAACTGGAGGTGCAGAGACAGCTACAATTAAGGATAGAAGCCCAGGGTAAATACTTGAAGAAGATAATTGAAGAGCAACAGAGGCTCAATGGGGTTGCAGCCCCAGTTCAAGATGTGTGCCAAGAACATGATCATAAGACTGACCCGGCAACCCCGGACCCTGAAAAAGCCGCCAAAGAGCGCGTCCCAGCAAAGAGTCTTTCAATTGAATCTTTTTCATCTCACCATGAACCATTGACACCAGATTCTATTTGCCATGTGGGTTCCCCTGCTGACAGCCCTAAAGGGGAGAGATCAACTAAGAAGCAAAGAGTAAGCATGGAGGGAACATATTCTAAACCAGACATCGTGCTTCCACATCAGATACTGGAATCAAGCATGTCATCATACCAGCAACCAAACACTGTTTTCCTTACCCAAGAGCACTTTGATCCTTCTTTGGGTATATCATCTACCAGAAGTGGTGAGGAATTGGAAAAGGTTGGTGGCAGTAATATGTGA 873 0.4616 MDPGNGGNSLTNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDALSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLNGVAAPVQDVCQEHDHKTDPATPDPEKAAKERVPAKSLSIESFSSHHEPLTPDSICHVGSPADSPKGERSTKKQRVSMEGTYSKPDIVLPHQILESSMSSYQQPNTVFLTQEHFDPSLGISSTRSGEELEKVGGSNM* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01212 290 Coils Coil 109 129 - -
Rops11g01212 290 MobiDBLite consensus disorder prediction 166 187 - -
Rops11g01212 290 Gene3D - 18 77 - -
Rops11g01212 290 MobiDBLite consensus disorder prediction 269 290 - -
Rops11g01212 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 76 IPR017930 -
Rops11g01212 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 279 IPR044848 GO:0003700
Rops11g01212 290 FunFam Myb family transcription factor 18 76 - -
Rops11g01212 290 MobiDBLite consensus disorder prediction 166 237 - -
Rops11g01212 290 MobiDBLite consensus disorder prediction 78 96 - -
Rops11g01212 290 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Rops11g01212 290 Pfam MYB-CC type transfactor, LHEQLE motif 106 152 IPR025756 -
Rops11g01212 290 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Rops11g01212 290 MobiDBLite consensus disorder prediction 78 103 - -
Rops11g01212 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01212 Rops-Chr11 17950552 17955551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01212 54 290 G2-like Transcription Factor Family AT2G01060 62.151 1.68e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops11g01212 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01212 - - gmx:100784511 476.863