Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01209 ATGACGTCCATAACTTCGAAAAACTTATGGATTCGGAGGCAACAATACCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGGTGCTGAAGAGGGTTCTGCAGCACCAGAATTGGTGAAGGAAGAGAAAGCATCATCTGGAGCTATGGTTACCCCCTATGTTGGAATGGTATTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTGTTAGGAAAGAAAGATCTAGAATTAGCCCTCAATTGGGCATTTACAAACGTGACTTTGTTTGTTACCGGTCTGGATTTTCCCCAGTGAAGAAGAAGCCCAATGGAGAACACCATAGAGATAGGAAATCATTTAGTAATGTTCACAATCATGAGCTTTTGGAAGATGACCAAGTGCGCCTTCTGCCTGCATATCTTAAAATTCACGAGGCTGATCAAGTGCGTATACTCTTGCTTTCCAAAGCCGGGTTTCCAGTACATCGGATCGTGAAAATGCTTGAGTTGGAAAAGGGGATTCAAGTTGGGCAACTGCCTTTCTTAGAAAGGGACGTGAGGAACTTTGTTCAAAACCACAAGAAGGTTGTTCAAGAGAATGAGGCATTGCTCATGGATGAGAATGATAAGGTTGAAAATGTAGCTTGGTCATATGGTGGCTCTGTCAATGCAAATGCTATGTTTGGTGATGTAGTTTATTTTGACACTACATATCTATCAATCACTTATGGATTGCTTTTTGGAGTATGGTTTGGTATTGATAGCTATGGTAGAACCATCTTTTTCGGTTGTGTTTTATTGCAGGATGAAACACCTCAATCCTTCTCATGGGCATTACAGACTTTTGTCCGGTTCATGAGAGGAAGATGTCCACAAACAAGTCTATCTGATCTAGACCCCGGACTTAGAGATGCCATTAGAAGCGAATTTCCAGGAACTAAACATGTCATTCCTATGTGGAATATTCTAAACAAGGTACCCAGTTGGTTTTCTCTTCCTCTTGGATCTCGCTATGCAGAATTTAAAACCAACTTACTCGAAGTCTATGGATGCATTTTTGAAGGGGATCTCACTGAACATACATGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAATTTTCAACATCAATCACATCAGGAGACTCAATATATACATCTTAAAACTTGCATACCAATTGAAGAACATGCTCGGAGTATTCTCACACCTTTTGCTTTTAATGCTTTGCAGCAAGAATTAATGCTGTCAATGCAATATGCTACAACTGAAATGGCCAATGGATCATATATCATGCGGCATTTCAAAAGAATGGATGGAGAACGGCTTATAATATGGTTGGCTGAAGACAAACAGATACACTGCTCTTGCAAGGAATTTGAATCCTCAGGAATATTATGCAGACATGCTCTTCGTGTATTTGTAATAAAGAATTACTTCCAGCTGCCTGACAAATACTATTTAAGTAGATGGAGACGGGAATGCCCTTTACTTGTTGAGGATGATCATAACAATCAGAGTATTGGTGGGGAATGGTTTCAAGAATATCAGTCCCTAGCTGAAACTCTATTTTCAGAATCATCAATTACAAAGGAGCGATCTGACTATTTTTGCATAGAACTGACAAAAGAACTTACTAGGATTCTTAATGAGGTTAGAAATCTGCCTGAGACTGATGGAGTCTGCATGAACATGACTGTTTCGCCAACCAGTCAGTTTGAAGTGTTGGGTTGTATATATGTGATGAAATGTGAGTTTGCAACTACTTGA 1785 0.3961 MTSITSKNLWIRRQQYPCGDWKCYITYEGGAEEGSAAPELVKEEKASSGAMVTPYVGMVFKSDDDAFEYYGNFARKNGFSVRKERSRISPQLGIYKRDFVCYRSGFSPVKKKPNGEHHRDRKSFSNVHNHELLEDDQVRLLPAYLKIHEADQVRILLLSKAGFPVHRIVKMLELEKGIQVGQLPFLERDVRNFVQNHKKVVQENEALLMDENDKVENVAWSYGGSVNANAMFGDVVYFDTTYLSITYGLLFGVWFGIDSYGRTIFFGCVLLQDETPQSFSWALQTFVRFMRGRCPQTSLSDLDPGLRDAIRSEFPGTKHVIPMWNILNKVPSWFSLPLGSRYAEFKTNLLEVYGCIFEGDLTEHTCLRSFFEQVGISANFQHQSHQETQYIHLKTCIPIEEHARSILTPFAFNALQQELMLSMQYATTEMANGSYIMRHFKRMDGERLIIWLAEDKQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYYLSRWRRECPLLVEDDHNNQSIGGEWFQEYQSLAETLFSESSITKERSDYFCIELTKELTRILNEVRNLPETDGVCMNMTVSPTSQFEVLGCIYVMKCEFATT* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01209 594 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 533 IPR031052 GO:0006355
Rops11g01209 594 Pfam SWIM zinc finger 456 479 IPR007527 GO:0008270
Rops11g01209 594 ProSiteProfiles Zinc finger SWIM-type profile. 448 483 IPR007527 GO:0008270
Rops11g01209 594 Pfam FAR1 DNA-binding domain 68 122 IPR004330 -
Rops11g01209 594 SMART 26again6 458 485 IPR006564 GO:0008270
Rops11g01209 594 Pfam MULE transposase domain 235 328 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01209 Rops-Chr11 17790072 17792702 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops11g01209 MULE 3.9e-15 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01209 - - gmx:100817107 947.962