Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01207 ATGTCTGTCATCGAAACCCCCACCGGCGATTTAGTTCACCGGCAGCGCGGTGATGGCGCCGCCACTGACCACCACCATCACCTCTCCAAATGGAAAGATGACGACTACGACGCAGTTTCCGTGAGGAAGAAGAAAGACTCCAAAACGACAACGCCATTGCAGTTTTTCGTTCGCATGATGTCTCAAAGCAAAAGCTTGATAATTCATGGCTGTGAAGAAGAGACAGTAAAATCTGTTCACGAAAAGATTGAGAGAATAACAGGGATTCCGGTTCGCGAGCAGAGACTAATATACAAAGGGAAGCAGCTTGGTCCAGACAAGAGTCTTGGCGAGTGTGGGGTCCAAAACGACGCTAATATTCAATTGGTTGGGTACTTACGCAGCGGTGGTTGCTCGAAATTATGGCAGGCAATGGAAAACATGGTTTCACTCATTTGCAGTATGTGCAAAGGAGAAATGGTTAATGAAGCTTCAAAGACCATCAATCATCTCATGACAATGTATTTCGATATCCCTGACTACTTCGATGTTTTCATGTCTTCCAAAGCTCCCTTTATGCTTGTCAAACTCTACTTGTCCCCCTTTAAAGGTAACAAGGACATTGGTTGTTCAGCTATTAGGCATTTCTTTAGCTGTTGCAACACTAGCTTGTGCAAAGAGTTGAAGCGTTGTTCTTTTGTTGTGTTGTTGAAGTTTTGTAGATTGCTTAAACTGATGGGGTGTGATGATTCTTTGTATTCTTATTGCTGGAATTCTTACTGGACTTTGGTGAAGGAAACTGGTTATAGTGGTGGATATAGGAATATGGTACATGATATGTTCCTTTTTATCTCTGACATTGTTGAAAACCTTTTGAGGGATTTGAATTTGAGTATAAATTCCCCCAATGGCGTGGGGCCCTTGTGGAGAGATGTTAATGATTTCACAGCATTCTTAATGACTTTAAGGTTTGGAATCAGAAGGCGGCAAGCTTCGGAGGGTTCTGTGAATAATGGAATTTGCCATCGGGAGGGCTTCTTGCTTGCACATCAGTATGAGCATCTTCGTATTATATATATCCGGTTATTGAGCAAACTGGATGAGTGCCTTCACGGTATGGAGGGTTGCTTGGCCAACAAGGAACAAGGGGAAGGGAAAGAAACTGTTGTTTATTCTGGGTGGTCTCAGTATCTCAAGATCTTGAAGGAATTGTATCAAATCTCCAAGCTTTATGACGGCGCCGAAGAGAAATTTTGGATGTTTTTGATGCATCGAAGAAGCATGTTTTCTCTGCTTATTGTTCGGTATGCAAAGAGAACTGATGATCATCAGTGGATTCTTGAGCACAAAAGTGTAACCAATTTTGAAGCCAGGAGGCATTTGGCAATGTTGCTATTCCCTGATGAAGAAGAAGACTATGATGATGGCTTGTATGAGATGCTTATTGATCGATCTAATTTATTGACTGAATCTTTTGAGTACATAGCACGAGCAGAACCTGGATCTCTGCAGGCTGGTCTATTTATGCAATTTCAGAATGAGGAAGCTACTGGACCGGGTGTGCTGAGGGAGTGGTTTCTTTTAGTATGTCAAGCAATATTTAATCTGCAAAATACTCTTTTTGTGGCATGCCCAAATGACCGCAGGAGATTGTTCCCTAGTCCTGCATCTAAGGTACATCCTCAGCACCTTGAGTACTTCAGCTTCTCAGGTCGTATTATTGCATTAGCTTTGATGCATAAAGTGCAAGTGGGTGTTGTTTTTGATCGCGTGTTTTGCAAGCAATTGGCTGGAAACTATATTACTTTAGAAGATATACAGGATGCAGATCCTTACTTGTATAGTAGCTGCAAGCAAATATTGGTGATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGCTAGAGAGGTGGACGAACTAGGATGCAGGAAAGTGATAGAGCTCTGCCCTGATGGGAAAAACCTTGTAGTGAATAGTAGGAACAGGGAGAAGTATGTTGACCTTCTTATACAGAATTGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTACCAAGGGTTTTACTGATATTCTTTCCAACTCCAAGCTCCAGCAGTTCTTTCAAATTTTAGAGCTTGAAGATCTTGATCACATGATGCATGGGAGCGAAAAGGTCATTTCTATTGAAGATTGGAAGGCGCATACTAAGTATAAGGGCTATAAAGAGACTGATTGTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCTGAACAGAGGAGGGCTCTTCTATTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTTCATGGTTTGGCTTCCCGTCTATGCATTTCCAGATCCATTGAATCTGAGGATCACTTGCCCTCATCTCAGACATGCTTTTACCGGCTGTATTTCCCTCCTTATTCTTCTATGGCTGTCATGCAAGATCGCCTTGGATTCATCACTCAAGAACACATTGGTTGCAGTTTTGGTGCTCGGTGA 2496 0.4199 MSVIETPTGDLVHRQRGDGAATDHHHHLSKWKDDDYDAVSVRKKKDSKTTTPLQFFVRMMSQSKSLIIHGCEEETVKSVHEKIERITGIPVREQRLIYKGKQLGPDKSLGECGVQNDANIQLVGYLRSGGCSKLWQAMENMVSLICSMCKGEMVNEASKTINHLMTMYFDIPDYFDVFMSSKAPFMLVKLYLSPFKGNKDIGCSAIRHFFSCCNTSLCKELKRCSFVVLLKFCRLLKLMGCDDSLYSYCWNSYWTLVKETGYSGGYRNMVHDMFLFISDIVENLLRDLNLSINSPNGVGPLWRDVNDFTAFLMTLRFGIRRRQASEGSVNNGICHREGFLLAHQYEHLRIIYIRLLSKLDECLHGMEGCLANKEQGEGKETVVYSGWSQYLKILKELYQISKLYDGAEEKFWMFLMHRRSMFSLLIVRYAKRTDDHQWILEHKSVTNFEARRHLAMLLFPDEEEDYDDGLYEMLIDRSNLLTESFEYIARAEPGSLQAGLFMQFQNEEATGPGVLREWFLLVCQAIFNLQNTLFVACPNDRRRLFPSPASKVHPQHLEYFSFSGRIIALALMHKVQVGVVFDRVFCKQLAGNYITLEDIQDADPYLYSSCKQILVMDADFIDSDALGLTFAREVDELGCRKVIELCPDGKNLVVNSRNREKYVDLLIQNCFVTSISEQVSHFTKGFTDILSNSKLQQFFQILELEDLDHMMHGSEKVISIEDWKAHTKYKGYKETDCQISWFWEIVGRMSAEQRRALLFFWTSVKYLPVEGFHGLASRLCISRSIESEDHLPSSQTCFYRLYFPPYSSMAVMQDRLGFITQEHIGCSFGAR* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01207 831 SMART hect_3 490 829 IPR000569 GO:0004842
Rops11g01207 831 PRINTS Ubiquitin signature 85 105 IPR019956 -
Rops11g01207 831 PRINTS Ubiquitin signature 64 84 IPR019956 -
Rops11g01207 831 PRINTS Ubiquitin signature 106 127 IPR019956 -
Rops11g01207 831 FunFam E3 ubiquitin-protein ligase UPL5 715 830 - -
Rops11g01207 831 SUPERFAMILY Hect, E3 ligase catalytic domain 471 816 IPR035983 GO:0004842
Rops11g01207 831 Gene3D - 44 143 - -
Rops11g01207 831 CDD HECTc 472 829 IPR000569 GO:0004842
Rops11g01207 831 Gene3D Hect, E3 ligase catalytic domain 714 829 - -
Rops11g01207 831 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 592 674 - -
Rops11g01207 831 Pfam Ubiquitin family 56 124 IPR000626 GO:0005515
Rops11g01207 831 Pfam HECT-domain (ubiquitin-transferase) 521 822 IPR000569 GO:0004842
Rops11g01207 831 Gene3D Hect, E3 ligase catalytic domains 474 706 - -
Rops11g01207 831 Gene3D Hect, E3 ligase catalytic domain 592 674 - -
Rops11g01207 831 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 307 829 - -
Rops11g01207 831 MobiDBLite consensus disorder prediction 1 28 - -
Rops11g01207 831 SMART ubq_7 53 125 IPR000626 GO:0005515
Rops11g01207 831 ProSiteProfiles HECT domain profile. 492 831 IPR000569 GO:0004842
Rops11g01207 831 ProSiteProfiles Ubiquitin domain profile. 53 129 IPR000626 GO:0005515
Rops11g01207 831 SUPERFAMILY Ubiquitin-like 54 141 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01207 Rops-Chr11 17743977 17749731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01207 53 129 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 33.766 2.78e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01207 - - gmx:100796470 1020.38