Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01171 ATGAGTCGAAGAAACATCACCACCGATGAATTTGCGCTTCTTGCGTTCAAATCCTCCATTACTTTAGACCCCTATCATATGATCAGTAATTGGTCAACCTCCTCTTCTTCTTATTCTTTGTTCAATTGGGCTGGTGTCACGTGTGATTGGCACCATGGAAGAGTGAAGGCTTTGAATCTGAGTAACATGGGCCTTAGAGGTACCATTTCCCCACAACTGGGGAATCTCTCCTTCCTTGTTGAGCTTGACCTCCATGGCAATGGCTTCTATGGTCAGTTGCCACAAGAGTTATTTGGGTTGCACCGATTGAAGTTGCTTGACTTGAGCAACAACGAGTTTGTTGGAGGAATCCCTGCAAGGTGTTATCTCTTCAATAATGATCTTTCTGGTAGGATACTGATTATTTGGCATCAATGCAAAGACTTGGAAGATTTAGAACTATCCAACAATAATTTCGAAAAAGGACGTCTGCCAGCCGACATCGGAAACTTGACCAAGCTTCAATATTTATATCTTGAAAGCAACAACTTGGAAGGAGAAATTCCAGTCTCCCTTGTAAATATCTCTTCTTTGAAGGAGGTCAACCTTCAAGAAAACAATTTAAATGGAAGTGTCCCGCATGAGATGTGTCATCAGCTTCCTCAACTTGAAGCCTTTAGTTTATATGGTAATCAAATTGAAGGAAGCATTCCAAGATCAATTGGCAACTGCACATCACTTAAAGAGCTATACTTAGGGAACAACTATCTGGCAGGTTCGATACCCATAGAGATTGGTGATCTTCGTCAACTTGAGAGTGTATCATGGGAATTTAATAACTTGAGTGGACCTATACCTTCAAAACTCCTCAACATGTCAACATTGACATTCTTACATATCGGATATAATTCTCTCTCCGGAATTCTTCCATCAAACATGGGATATGGCCTTCCTAACTTGGAAAACCTATACCTGTATAAAAATAAACTTGTTGGAAACATTCCAGATAGTATATCCAACATTTCTAAGCTCATTCAATTCGACTTGAGTGGCAATGAACTTAGCGGAGTCATACCTTATGTATTTGGAGATTTAACAGTCCTTGAAGGGCTCATGATAGATGATAATAATTTGACACTTGATTTCAACTTCTTTACTTCGCTGACAAGTTGTAGACACTTGATTATTCTGGATGTGTCAAAAAATAGTTTACTATCGAAACTTCCCAAATCAATTGGAAACTTATCCAAGTCTCTAGAAAAATTTTGGGCAGAATCTAGTGGAATAAATGGCAATATTCCGCTAGAAATTGGAAACACAAGTGACTTGATAATGTTATCTTTAAGTGGGAATGATTTAATTGGACCAATGTCTAGTACAATCAAAAGGCGGCATAAACTTCAGTATTTGAATCTTGGCTACAATGGATTGCAAGGACCTATCATTGATGAGCTTTGTGAAATTAGAAGTTTGAGTGAGTTGTATCTAACAAACAATAAGCTTTCTGGAGTGTTACCAACATGCTTGGGAAATATGACTTCACTTAGAAAGGTTTACATGGAGTTTAATAGATTGACGAGGATACCTTCATCTTTTTGGAGTCTCAAAGATATGTTAGAGGTAAACTTATCCTTCAATGCTTTAATTGGAAATCTTCCACTTGAGATTGGGCAGTTTAGGACTCTTTTCCTATTGGATCTATCAAGAAATGAGATATCAAGCAACATTCCTACAACCATTACTTTCTTGAAAACTTTGCAGACTCTCTCTTTAGCGCACAACAAATTACGAGGGTCTATTCCTACATCACTTGGTGAAATGGTAAGCTTAAGCTTCTTGGACTTATCCCAAAATCTTTTGTCTAGTGTGATTCCAAAATCCTTTGAGTCACTTACTTATCTTCAATACATTAACTTTTCATACAATAGATTACAAGGAGAGATTCCAAATGGTGGACCTTTCATAAATTTCACAGCTCAATCTTTCGTGCATAATAAAGCACTTTGCGGTAATCCTCGCCTACAAGTACCTCCATGTAGTAAACAAATTAAGCGAAGGTCAAAGGCAAAGACATTTTTAATCAAATGCATATTGCCCATAATTGTGTCAATCATTTTGGTTGTTACCTGCATGATACTTCTACAACGTAAAAGGAACAAGGTTGAAAATTCACTTGAAAGGGATTTATCCACTTTAGGAGTTCCAAGAAGGATTTCCTATTATGACATTGTACAAGCAACAAATGGATTCAGTCCGAGTAATTTACTTGGAAGGGGGAGTTATAGTTCTGTGTATCAAGGGATGCTCTCTAGTGGAATGATGGTTTCAATTAAAGTATTTGATTTGGACTTGGAAGCAACATCAAGAAGCTTTGATGCAGAATGCAATGCAATGCGCAATCTACGACATCGAAATCTTGGTAAGATTATCAGTAGTTGTTCAAATACTGATTTTAAATCTTTGGTAATGGAGTTCATGTCAAATGGAAGCGTGGACCAATGGTTATACTCAGATAACTATTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTACATTGGAATATCTCCATCACGGTTCTTCAATACCAGTGGTTCATTGCGATCTAAAGCCTAGTAATGTTTTATTGGATGAAAATATGGTTGCACATGTTAGCGATTTTGGCATTGCCAAGCTCTTGGATGAAAGACAATCTAAAACACATACCGAGACCTTGGCTACTCTTGGCTACGTTGCACCAGAATATGGATCAAATGGAGTTGTTTCTATCAAAGGAGATGTGTATAGCTACGGGATTATGTTAATGGAAATGTTAACAAGAAAGAAGCCAACAGATGATATGTTTGCAGCAGGATTGAGCTTGAAAAATTGGATCAGTAAGTCAATGCCCAATTCAATCATGGAAGTTGTGGATTCCAATTTAGTACAACAACGTGGGGAACAAATTGATGATACATTGGCTTTTGTATCATCTATTTTGGAATTAGCCTTGAATTGTTGCTTTGATTCACCTGAAGCCCGAACTAATATGACGAATGTCATTGTGTCATTAACCAAAATCAAGACTTTGCTCAGCCAAGAAAATGAGAATGGAAGAAATAACTCATAA 3102 0.373 MSRRNITTDEFALLAFKSSITLDPYHMISNWSTSSSSYSLFNWAGVTCDWHHGRVKALNLSNMGLRGTISPQLGNLSFLVELDLHGNGFYGQLPQELFGLHRLKLLDLSNNEFVGGIPARCYLFNNDLSGRILIIWHQCKDLEDLELSNNNFEKGRLPADIGNLTKLQYLYLESNNLEGEIPVSLVNISSLKEVNLQENNLNGSVPHEMCHQLPQLEAFSLYGNQIEGSIPRSIGNCTSLKELYLGNNYLAGSIPIEIGDLRQLESVSWEFNNLSGPIPSKLLNMSTLTFLHIGYNSLSGILPSNMGYGLPNLENLYLYKNKLVGNIPDSISNISKLIQFDLSGNELSGVIPYVFGDLTVLEGLMIDDNNLTLDFNFFTSLTSCRHLIILDVSKNSLLSKLPKSIGNLSKSLEKFWAESSGINGNIPLEIGNTSDLIMLSLSGNDLIGPMSSTIKRRHKLQYLNLGYNGLQGPIIDELCEIRSLSELYLTNNKLSGVLPTCLGNMTSLRKVYMEFNRLTRIPSSFWSLKDMLEVNLSFNALIGNLPLEIGQFRTLFLLDLSRNEISSNIPTTITFLKTLQTLSLAHNKLRGSIPTSLGEMVSLSFLDLSQNLLSSVIPKSFESLTYLQYINFSYNRLQGEIPNGGPFINFTAQSFVHNKALCGNPRLQVPPCSKQIKRRSKAKTFLIKCILPIIVSIILVVTCMILLQRKRNKVENSLERDLSTLGVPRRISYYDIVQATNGFSPSNLLGRGSYSSVYQGMLSSGMMVSIKVFDLDLEATSRSFDAECNAMRNLRHRNLGKIISSCSNTDFKSLVMEFMSNGSVDQWLYSDNYCLDFLQRLNIMIDVASTLEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLLDERQSKTHTETLATLGYVAPEYGSNGVVSIKGDVYSYGIMLMEMLTRKKPTDDMFAAGLSLKNWISKSMPNSIMEVVDSNLVQQRGEQIDDTLAFVSSILELALNCCFDSPEARTNMTNVIVSLTKIKTLLSQENENGRNNS* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01171 1033 Gene3D Ribonuclease Inhibitor 308 375 IPR032675 -
Rops11g01171 1033 SMART LRR_typ_2 76 100 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 164 187 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 188 212 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 213 237 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 600 623 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 576 599 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 310 333 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 505 528 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 334 357 IPR003591 -
Rops11g01171 1033 SMART LRR_typ_2 481 504 IPR003591 -
Rops11g01171 1033 Pfam Leucine rich repeat 555 613 IPR001611 GO:0005515
Rops11g01171 1033 Pfam Leucine rich repeat 482 541 IPR001611 GO:0005515
Rops11g01171 1033 Pfam Leucine rich repeat 190 250 IPR001611 GO:0005515
Rops11g01171 1033 Pfam Leucine rich repeat 311 371 IPR001611 GO:0005515
Rops11g01171 1033 SMART LRR_sd22_2 576 597 - -
Rops11g01171 1033 SMART LRR_sd22_2 213 239 - -
Rops11g01171 1033 SMART LRR_sd22_2 164 190 - -
Rops11g01171 1033 SMART LRR_sd22_2 384 410 - -
Rops11g01171 1033 SMART LRR_sd22_2 600 621 - -
Rops11g01171 1033 SMART LRR_sd22_2 310 336 - -
Rops11g01171 1033 SMART serkin_6 743 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01171 1033 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 121 374 - -
Rops11g01171 1033 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 380 676 - -
Rops11g01171 1033 Gene3D Ribonuclease Inhibitor 376 680 IPR032675 -
Rops11g01171 1033 Gene3D Ribonuclease Inhibitor 8 121 IPR032675 -
Rops11g01171 1033 SUPERFAMILY Protein kinase-like (PK-like) 723 1015 IPR011009 -
Rops11g01171 1033 FunFam Serine-threonine protein kinase plant-type 724 818 - -
Rops11g01171 1033 Pfam Leucine Rich Repeat 166 186 IPR001611 GO:0005515
Rops11g01171 1033 SUPERFAMILY L domain-like 417 665 - -
Rops11g01171 1033 FunFam Leucine-rich repeat receptor-like kinase 10 120 - -
Rops11g01171 1033 Pfam Leucine rich repeat N-terminal domain 8 49 IPR013210 -
Rops11g01171 1033 PANTHER OS04G0122200 PROTEIN 252 1019 - -
Rops11g01171 1033 SUPERFAMILY RNI-like 58 372 - -
Rops11g01171 1033 ProSiteProfiles Protein kinase domain profile. 743 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01171 1033 Pfam Protein kinase domain 746 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01171 1033 Gene3D Phosphorylase Kinase; domain 1 726 818 - -
Rops11g01171 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 862 874 IPR008271 GO:0004672|GO:0006468
Rops11g01171 1033 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 819 1028 - -
Rops11g01171 1033 Gene3D Transferase(Phosphotransferase) domain 1 819 1032 - -
Rops11g01171 1033 Gene3D Ribonuclease Inhibitor 209 307 IPR032675 -
Rops11g01171 1033 Gene3D Ribonuclease Inhibitor 122 208 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01171 Rops-Chr11 17190789 17202825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01171 509 643 Receptor kinase-like Gene Family AT3G47570 33.333 3.52e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops11g01171 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01171 - K13420 mtr:25481440 1098.96