Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01168 ATGGACCTCTTCGCCGCCGACCACGTCTCCCCATTTCCCGATTCCGGCAACCTCCTTTACGCCGCCGACCTCCTCTCCCACAGCCACAATCCCCAGAAGCTCCGCCCCATCAGGTCCTCCGTCCCCCCCTCCGCCTCCTCCGGTTACCTCCTTCACGCTGACGACTCATCTCTCAACCTCGACCCTCCCCCTGAGCCTCTAGAACCTTCTTCCCTCCAGATTCAGGATCCGACGGGTCCCGGGTCGGGTTATGCCACGTTGCCACTCGGGCAGGAATCTGGCTCATCTTTGGATGATGATGATGATGATGATGATTCATCAGCAAGTACTAAAGAACTTGGCTCTAGAAAGAGAAGGAAAAGGACAAAGAGAAAGCTAGAAGATTTTGTAGAAAATTTGGTAATGAAGGTGATGGAAAAGCAAGAGCAGATGCATAAAGAATTGGTTGACATGATAGAGAGCAAGGAAATGGAAAGAGTAAAGAGAGAAGAAGCATGGAAGCAAGAGGAGATGGAAAGAATTAAAAAAGATGAAGAAGCTAGAGCCCAAGAAAGGTCTCGTAATTTGGCCCTTATATCCTTCATTCAGAATCTTTTAGGCCATGAAATTCAAATTCCTCAACCAGCAGAAGCAAGCAGCAAAAGAGAAGAGGATGAAGTTGAGGTGAACATTCAAAAAGATTTCAACAGTGATTTAAGTAACAACAGATGGCCAGATGTTGAAGTACAAGCACTCATAACAGTAAGAACTTCATTGGATCACAAGTTTCGTGTCATGGGATCCAAAGGATCAATATGGGAGGAGATATCTGAAGCAATGCATGGCATGGGCTACAACCGTTCTGCAAAGAAGTGTAAGGAGAAATGGGAGAACATCAACAAGTACTATAAAAGGACAATTGGGAGTGGCAAGAAAAGGCGTCAAAATAGTAAAACTTGCCCTTACTTTGATGAGTTGGACGTTCTGTATAGAAATGGTCTCCTTAATCTTGGAAATGCTTTGAGCAATACCAACGATGTTCCCAAGATTGAAGAGAAGGAAGGAGTAGAGTGA 1053 0.4539 MDLFAADHVSPFPDSGNLLYAADLLSHSHNPQKLRPIRSSVPPSASSGYLLHADDSSLNLDPPPEPLEPSSLQIQDPTGPGSGYATLPLGQESGSSLDDDDDDDDSSASTKELGSRKRRKRTKRKLEDFVENLVMKVMEKQEQMHKELVDMIESKEMERVKREEAWKQEEMERIKKDEEARAQERSRNLALISFIQNLLGHEIQIPQPAEASSKREEDEVEVNIQKDFNSDLSNNRWPDVEVQALITVRTSLDHKFRVMGSKGSIWEEISEAMHGMGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKTCPYFDELDVLYRNGLLNLGNALSNTNDVPKIEEKEGVE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01168 350 Coils Coil 138 177 - -
Rops11g01168 350 ProSiteProfiles Myb-like domain profile. 229 293 IPR001005 -
Rops11g01168 350 FunFam Trihelix transcription factor GT-2 237 298 - -
Rops11g01168 350 Pfam Myb/SANT-like DNA-binding domain 235 321 IPR044822 -
Rops11g01168 350 PANTHER FI21293P1 78 333 - -
Rops11g01168 350 MobiDBLite consensus disorder prediction 32 53 - -
Rops11g01168 350 Gene3D - 237 298 - -
Rops11g01168 350 MobiDBLite consensus disorder prediction 31 122 - -
Rops11g01168 350 CDD GT1 235 299 - -
Rops11g01168 350 SMART sant 233 295 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01168 Rops-Chr11 17130019 17132071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01168 15 325 Trihelix Transcription Factor Family AT5G47660 35.342 1.41e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops11g01168 Myb_DNA-bind_4 1.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01168 - - gmx:100820302 441.039