Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01154 ATGACGTCCATAACTTCGAAAAACTTATGGATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATGCTGAAGAGGGTTCTGCAGCACCAGAATTGGTGAAGGAAGACAAAGCATCATCTGGAGCTATGGTTACCCCCTATGTTGGAATGGTGTTTAAGAGTGACGATGATGCCTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTGTTAGGAAAGAAAGATCTAGAATTAGCCCTCAATTGGGCATTTACAAGCGTGACTTTGTTTGTTACCGGTCAGGATTCGCCCCAGTGAAGAAGAAGCCCAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAAATGTATTTGTCTAAGGAAGTTGTAGAAGGGACTTCCCAATGGATTGTCGTGCAGTTTAGTAATGTTCACAATCACGAACTTTTGGAAGATGATCAAGTGCGCCTTCTGCCTGCATATCGTAAAATTCACGAGGCTGATCAAGAGCGTATACTCTTGCTTTCCAAAGCTGGGTTTCCAATACATCGGATAGTGAAAATGCTTGAGCTGGAAAAGGGGATTCAAGGTGGGCAACTCCCTTTTTTGGAAAGGGACGTGAGGAACTTTGTTCAAAACCGCAAGAAGGTTGTTCAAGAGAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATATATTGGAACTTCTTGAAGTATGCAAAGCCATCAAAGAAGCAGATGATGACTTTGTTTATGATTTTACAGTGGATGAGAATGATAAGGTTGAAAATATAGCTTGGTCATATGGTGACTCTGTCAATGCAAATGCTATGTTTGGTGATGTAGTTTATTTTGACACTACATATCGATCAATCACTTATGGATTGCTTTTTGGAGTATGGTTTGGAATTGATAGCTATGGTAGAACCATTTTATTTGGTTGTGTTTTATTGCAGGATGAAACACCCCAATCCTTCTCATGGGCATTACAGACTTTTGTCCGGTTCATGAGAGGAAGATGTCCACAAACAATTCTATCCGATCTTGACCCCGGACTTAGAGATGCCATTAGAAGCGAATTTCCAGGAACTAAACATGTCATTCCTATGTGGAATATTCTAAACAAGGTACCCAGTTGGTTTTCTCTTCCTCTTGGATCTCGCTATGCTGAATTTAAAACCGAGTTCGATGCATTATTTCACATTGAGAATACAGAGGAATTTGAACTTCAATGGAGCCAAATGATTTCTGTGTTTGGACTTGGTTCAGATAAACATACTGATTTACTGTATTCTGTTCGAGCATCCTGGGCACAATCCTATGTAAGAGGTTACTTTTTGGCTCGAATGGCAACAATAGCTTACTCGAAATCTATGGATGCATTTTTGAAGGGGATCTTCACTGAACATACATGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAATTTTCAACATCAATCACATCAGGAGACTCAATATATACATCTTAAAACTTGCATACCAATTGAAGAGCATGCTCGGAGTATTCTCACACCTTTTGCTTTTAATGCTTTGCAGCAAGAATTAATGCTGTCAATGCAGTATGCTACAACTGAAATGGCCAATGGATCATATATTATACGGCACTTCAAAAAAATGGATGGAGAACGGCTTATAATATGGTTGGCTGAAGACGAACAGATACACTGCTCTTGCAAGGAATTTGAATCCTCAGGAATATTATGCAGACATGCTCTTCGTGTATTTGTAATAAAGAATTACTTCCAGCTGCCTGACAAATACTATTTAAGTAGATGGAGACGGGAATGCCCTTTACTTGTTGAGGATGATCATAACAATCAAAGTATTGGTGGGGAATGGTTTCAAGAATATCAGTCCCTAGCTGAAACTTTATTTTCAGAATCATCAATTACAAAGGAGCGATCTGACCATGTTCGCAAAGAACTGACAAAAGAACTTACTAGGATTCTTAATGAGAAACGAAGTAATCACGATTTGGAAGAGATCGGGAGAAGTAATCAAGGGTATAATCATGGATTTGGAGAATCTGATTCGCCAGACCAATGGCGATTTTCAGCATTCATTGAAAAAGAGGTCCTTGTAAAGAACATGAATTTATTTATATGGGAAATTAGACGGTCAAGAAGTTTTCACACTGACCTTGCTTGGAAGGTCGTTGTACTAGCAGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAATGTTGATGAATTAAAATCATGGCTATTGCTGAACATTTTATGGCAGCAAATATTGAATGTGATGAAACTGGAAGTTCAAGAAAACACAATTGTGATAATCAAGATAAGAGAAGAGCTAAAGTTGCAAGGATGTGTCCAAAGAGCGGGTCTAGAATCTACCTTCGGCTTTGATGAAGTTGATTGA 2445 0.3914 MTSITSKNLWIRRQQCPCGDWKCYITYEGDAEEGSAAPELVKEDKASSGAMVTPYVGMVFKSDDDAFEYYGNFARKNGFSVRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGTSQWIVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLSEKRENDILELLEVCKAIKEADDDFVYDFTVDENDKVENIAWSYGDSVNANAMFGDVVYFDTTYRSITYGLLFGVWFGIDSYGRTILFGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILSDLDPGLRDAIRSEFPGTKHVIPMWNILNKVPSWFSLPLGSRYAEFKTEFDALFHIENTEEFELQWSQMISVFGLGSDKHTDLLYSVRASWAQSYVRGYFLARMATIAYSKSMDAFLKGIFTEHTCLRSFFEQVGISANFQHQSHQETQYIHLKTCIPIEEHARSILTPFAFNALQQELMLSMQYATTEMANGSYIIRHFKKMDGERLIIWLAEDEQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYYLSRWRRECPLLVEDDHNNQSIGGEWFQEYQSLAETLFSESSITKERSDHVRKELTKELTRILNEKRSNHDLEEIGRSNQGYNHGFGESDSPDQWRFSAFIEKEVLVKNMNLFIWEIRRSRSFHTDLAWKVVVLAGLKGFNGQLEFYNVDELKSWLLLNILWQQILNVMKLEVQENTIVIIKIREELKLQGCVQRAGLESTFGFDEVD* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01154 814 SMART 26again6 573 600 IPR006564 GO:0008270
Rops11g01154 814 Pfam SWIM zinc finger 570 594 IPR007527 GO:0008270
Rops11g01154 814 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Rops11g01154 814 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Rops11g01154 814 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 656 IPR031052 GO:0006355
Rops11g01154 814 Pfam MULE transposase domain 291 384 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01154 Rops-Chr11 16953276 16960609 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops11g01154 MULE 6.8e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01154 - - aprc:113874854 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01154 11 16953276 16960609 Rops11g01154 11 16953276 16960609 ECH