Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01151 ATGGGTCGTTCTCGTGGGAATTTTCACCACGCCGATGAGGACCCAAATCAAAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAAAATTCAGAATCTGGAGCAGCAGGCCAAGGATCAAGCGAAGGAAAAAGAGCCTTGTATCACTGCAATTATTGTAATAAAGATATTACAGGAAAAATCCGTATTAAGTGTGCTATGTGCCCAGATTTTGACTTGTGTATAGAATGCTTTTCTGTTGGAGCTGAGGTGACACCCCATAAAAGCAGTCATTCTTACAGGGTTATGGATAATTTGTCATTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCCGAGCATGTTGGGACAAAGAACAAAGAATCATGCATAGAACACTTTAGGAATGTGTACTTGAACTCCCCATTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAAGGCGAGGACAAGAAAGGAATTTCCATGGGGGATCATAGTTTAAAGGAAGAATCTCCCTTTTCTCCATCTAGAGTCAAAGTTGAAGATTCCCATAAAGCTGGTTCCTCTGGCCGTTTGCCTTCCAGTTTGCATTCAGAGTCAGATTCTGGCCCCTCAGGTAACACTCATGCTGCAGCTGGTGCTAATCAGAAGGCATCCAATGTGGCCCGCGGAAAAGGTGGTCCTGGAGTCATTAAAATGGAAGATTCTCATGTAGACAGAGATTTTGGAGGAAAGAAACCAAATTCCTCTGGAAATGAAGGTCCTTCTTTAGTAGAAGCCAGTGGTTATAACGCCAAAAGACAGGAATTTGATCCTGAATATGATAATGATGCTGAACAACTACTTGCTGAAATGGAATTGAAGGACACTGATACTGAGGATGAGCGAGAGCTGAAATTACGCGTATTGCGTTTCTATGCAAAAAGGCTTGATGAAAGAAAGCGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAAAAGGATTTAACACCTGAGGAGAAGACAATATGTCGGAAATATGACTTATTCATGCGCTTTCATGCTAAGGAAGAGCATGAGGAATTGCTTAGAACAGTTATCTCTGAACACAGAACTCTCAAAAGACTTCAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCAGATAGATATCTGGTACATAAGAGAAGAAGGGAAGCTGAAGAAAATGCTCGTAGGGCAAAAGAAAGTGCTCAAGTTGGCCCAAGCAGTCAGGGGGTTCCAAATGCATTAATGTCTCCAGATTCTGCTGGCAAGGATTTGAGTGCAAGACCTGCAGGCCCTGCTACTTCTAGCTCTGTCAATGAAATGGATGTCACAGGATACTATGGAGCAGATTTACTTTCTGAACCTGAGAAACGTTTATGCTGTGAGCTAAGGTTGCCTCCAGCCATGTATCTAAGGATGCAAGAGCAACTGTCTGTACAAATACTTGCTGGCACTGTCTCTGCAAAACCAGATGCTCATCAATTATTCAAGATGGATTCCATCAAAATTGACAGGGTGTATGATATGCTCATCAAGAAGGGAATTGGTTCACCCTGA 1677 0.4275 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGSSEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSSHSYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHFRNVYLNSPFFPLPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDHSLKEESPFSPSRVKVEDSHKAGSSGRLPSSLHSESDSGPSGNTHAAAGANQKASNVARGKGGPGVIKMEDSHVDRDFGGKKPNSSGNEGPSLVEASGYNAKRQEFDPEYDNDAEQLLAEMELKDTDTEDERELKLRVLRFYAKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKTICRKYDLFMRFHAKEEHEELLRTVISEHRTLKRLQELKEARAAGCRNSAEADRYLVHKRRREAEENARRAKESAQVGPSSQGVPNALMSPDSAGKDLSARPAGPATSSSVNEMDVTGYYGADLLSEPEKRLCCELRLPPAMYLRMQEQLSVQILAGTVSAKPDAHQLFKMDSIKIDRVYDMLIKKGIGSP* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01151 558 CDD SANT 108 150 IPR001005 -
Rops11g01151 558 ProSiteProfiles SWIRM domain profile. 472 558 IPR007526 GO:0005515
Rops11g01151 558 MobiDBLite consensus disorder prediction 215 242 - -
Rops11g01151 558 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Rops11g01151 558 FunFam Transcriptional adapter 2 473 557 - -
Rops11g01151 558 SUPERFAMILY Homeodomain-like 467 555 IPR009057 -
Rops11g01151 558 MobiDBLite consensus disorder prediction 178 213 - -
Rops11g01151 558 Gene3D - 473 556 IPR036388 -
Rops11g01151 558 SMART sant 104 153 IPR001005 -
Rops11g01151 558 CDD ZZ_ADA2 48 96 IPR041983 -
Rops11g01151 558 MobiDBLite consensus disorder prediction 441 455 - -
Rops11g01151 558 MobiDBLite consensus disorder prediction 429 479 - -
Rops11g01151 558 SUPERFAMILY RING/U-box 48 110 - -
Rops11g01151 558 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Rops11g01151 558 FunFam Transcriptional adapter 41 96 - -
Rops11g01151 558 MobiDBLite consensus disorder prediction 1 42 - -
Rops11g01151 558 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Rops11g01151 558 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Rops11g01151 558 MobiDBLite consensus disorder prediction 1 27 - -
Rops11g01151 558 Gene3D - 106 155 - -
Rops11g01151 558 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 553 - -
Rops11g01151 558 MobiDBLite consensus disorder prediction 178 286 - -
Rops11g01151 558 MobiDBLite consensus disorder prediction 257 273 - -
Rops11g01151 558 PIRSF Txn_adaptor_ADA2 35 558 IPR016827 GO:0003713|GO:0006357|GO:0035065
Rops11g01151 558 Gene3D - 39 95 IPR043145 -
Rops11g01151 558 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Rops11g01151 558 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Rops11g01151 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Rops11g01151 558 FunFam Transcriptional adapter 2 101 153 - -
Rops11g01151 558 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Rops11g01151 558 SMART zz_5 44 89 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01151 Rops-Chr11 16924771 16930283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01151 1 556 EF-hand Containing Proteins AT3G07740 46.783 6.94e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops11g01151 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01151 K11314 - gmx:100811887 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01151 11 16924771 16930283 Rops11g01151 11 16924771 16930283 ECH