Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01148 ATGCAAACGTCCGAGAAACACCCCTCTTCAGCTGGTATCCATTTATACCACCAGCCAGTGCAAGACATTGATCCATACACTCATTTCCAAATATTACAAAGCAACTCATGCCATGATATCCATGATAGTAGCAGTCAGGGAACCAATGTTTCTTTTGAAGCCTGCAAGGAGCAATACTTTACCCTGGAATCATCCCCAGCAACAACTGGTCTCATAGGCTGTGATTCTCCTTCCTATGCTAGTGTATCATCCAACAGGAGTCCTTTTTCTCCTCAAGCTTCCCAGTCATACCATTCAGATCAGCATCAGTCATCTGACAACACCTATGGATCACCAATAAGTGTACACTCTAGTGCTGATGATAGCTATGAATTGAAGCACAAACTTAAAGAACTGGAGATTTCACTGTTGGGGCCTGAGTCAGATATTGTTGACAGTTGTCACTGCTGTTTCAAGGGAGCATCTCCAACAGATAAATATAATTGGGCTCAGATTGAAGAAATGATTCCAAAGTTGGACTTGAAAGAAGTCCTCATTCAATGTGCACAAGCCGTGTCAGATGATGACATTCAAACAGCACTAGGCTTGATGAATAATGTGTTAGCAAAGATGGTATCAGTTTCTGGGGATCCAATCCAGAGGTTAGGTGCTTACATGTTGGAGGGTCTAAGAGCAAGGTTTGAATCATCAGGGAGTCTAATCTACAAATCCTTGAAGTGTGAACAACCAACAGGCAAAGAACTGTTGAGTTACATGCACATCTTGTATCAGGTTTGCCCATATTGGAAGTTTGCTTACATATCTGCAAATGTTGTCATCGAAGAAGCAATGCAAGATGAATCAAGAATTCATATAATTGACTTCCAAATTGCTCAGGGCACACAATGGTTATTACTTATCAAAGCTCTTGCATGTCGTCCAGGTGGACCTCCATTCATTCGTGTAACTGGCGTTGATGATTCCCAATCATATCATGCTCGGGGTGGAGGACTTCATATTGTAGGAAAACGGCTCTCAGATTATGCCAAGTCTTGTGGAGTACCATTTGAGTTCCATAGTGCCGCCATGTCTAGCTGTGAGGTTGAACTAGAAAACCTTGTAGTTATACCTGGGGAAGCTCTGGCTGTGAATTTCCCTTTCATTTTGCACCACATGCCGGATGAGAGTGTGAGTACAGAGAACCATAGAGACAGACTATTGAGATTGGTAAAGAGCTTGTCACCAAAGGTGGTGACCCTTGTTGAGCAAGAATCCAACACCAACACTTCTCCCTTTTTCCAAAGGTTTGTTGAGACCTTGAATTACTACACTGCTATGTTTGAGTCAATAGAAGTGGCCCTCCCCAGAGATGATAAGAAGAGGATTAGTGCAGAACAGCACTGTGTGGCTCGTGACATTGTCAACATGATTGCTTGTGAGGGGGCTGAGAGGGTGGAAAGGCATGAACCCTTTGGAAAATGGAGGTCAAGATTTTCAATGGCCGGTTTTGCACCATGCCCCTTGAGTTCTTCAGTGATTGCTTCAGTCAGAAATCTCTTGAATGAATTCAATGAAAATTATAAGCTTCAACACACGGATGTTGCTCTCTATCTAGCCTGGAAGAACAGATATATGTGCACCTCTTCAGCCTGGAGATGTTGCTGA 1644 0.4307 MQTSEKHPSSAGIHLYHQPVQDIDPYTHFQILQSNSCHDIHDSSSQGTNVSFEACKEQYFTLESSPATTGLIGCDSPSYASVSSNRSPFSPQASQSYHSDQHQSSDNTYGSPISVHSSADDSYELKHKLKELEISLLGPESDIVDSCHCCFKGASPTDKYNWAQIEEMIPKLDLKEVLIQCAQAVSDDDIQTALGLMNNVLAKMVSVSGDPIQRLGAYMLEGLRARFESSGSLIYKSLKCEQPTGKELLSYMHILYQVCPYWKFAYISANVVIEEAMQDESRIHIIDFQIAQGTQWLLLIKALACRPGGPPFIRVTGVDDSQSYHARGGGLHIVGKRLSDYAKSCGVPFEFHSAAMSSCEVELENLVVIPGEALAVNFPFILHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLNYYTAMFESIEVALPRDDKKRISAEQHCVARDIVNMIACEGAERVERHEPFGKWRSRFSMAGFAPCPLSSSVIASVRNLLNEFNENYKLQHTDVALYLAWKNRYMCTSSAWRCC* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01148 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 111 538 IPR005202 -
Rops11g01148 547 Pfam GRAS domain family 174 545 IPR005202 -
Rops11g01148 547 ProSiteProfiles GRAS family profile. 165 545 IPR005202 -
Rops11g01148 547 MobiDBLite consensus disorder prediction 83 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01148 Rops-Chr11 16828893 16832593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01148 1 545 GRAS Transcription Factor Family AT4G17230 59.489 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops11g01148 GRAS 4.2e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01148 - - gmx:100819190 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01148 11 16828893 16832593 Rops11g01148 11 16828893 16832593 ECH
Rops2g04646 2 84634785 84638334 Rops11g01148 11 16828893 16832593 PCT