Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01146 ATGGAAATGGATCCTGGCAAGCTTTTCATTGGCGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAACTTTGGAGATGTAGTTGAAGCTGTGATAATGAAGGATCGCACCACGGGGCGTGCTCGTGGTTTCGGATTTGTTGTTTTTGCTGATCCTTCTGTTGCTGAGCGAGTTGTTATGGAAAAGCATGTCATTGATGGTAGAACTGTTGAAGCAAAAAAGGCGGTCCCTAGAGATGATCAGAATGTTCTGAACAGAAGTAACAGCAGCTGTCATGGGTCACCTGGTCCTGCTCCTATTCGCACAAAGAAGATATTTGTTGGGGGTCTAGCATCCACAGTTACTGAGAGTGATTTTAAGAATTACTTTGATCAATTTGGAACAATTACAGATGTTGTTGTGATGTATGACCATAACACCCAAAGGCCTAGAGGTTTTGGATTCATCACGTATGATTCTGAGGAAGGAGTTGAGAAAGTGCTGCACAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAGGAATTATCTCCAGGGCCAAGTAAAGGCCAGTTAGGTGGATATAGTTCTGGCATGAGTAGAGTTAGTAGCTTTCCTAATGGATACATTCAGGGATATAATGCAAGCCTAGTTGGAGGGCATGGACTTAGGATAGATGGTAGATTGAGTCCTGTTACTGGCCGTGGTGGATATCCTTTTTTGAGTCCTAGTTATGGGACAGGACTCAACTTTGAGCCACCATTGAGCCAAAATGAAAATGCAAACTTCACATCTAACTTTGTCATAGGACGGGCATTGAACTCTTCATACAGTGGAAGTCCAAGCAGGTACAGTAATGCCATGGGGTATCCTGGTTCAAGTATTGGCAACAATTCAACCATAAGTTCAACAAATCAGAATTTGTGGGGGAATGGGAATCTTAACTATGCTACTAACCCTGCAAGCTCTGATGCTTTTGGAGGTTATGGAAGTGAAAATTCAAGCATGGGTTCTTTTGGTAATATTGGATCACTTTGGAGTTCCTCCCTTGGTGCTAATCAAGTTGGAACTATTGGCTCTGGATATGGTAAGGGCAGTCTTAGTTATAGGTCTGGAGATGTGATTTTAGGGTCAAAAACAGTAGGTTATGGAAAAAGCAATGAGAGCACTGTTGCATCAGCTTTACCGTACACTTTATCAAATGGCAGTTATGATGAGGCATACAAAGATAATTACGAAGCTGGGTCATTTTATCGGGACCATACTTGGAGATCATCAGCTTCAGAACTAGAGGATTCTGGCTCTCTTAGTTTTGGCTTTGAAAATGCTGTTTCAGATTTAATGAGCAATAGATCTGGTAGCCACATTGGGGCTTATACTGTTGCTAATACAGTCAAATAG 1416 0.4195 MEMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNRSNSSCHGSPGPAPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEGVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSKGQLGGYSSGMSRVSSFPNGYIQGYNASLVGGHGLRIDGRLSPVTGRGGYPFLSPSYGTGLNFEPPLSQNENANFTSNFVIGRALNSSYSGSPSRYSNAMGYPGSSIGNNSTISSTNQNLWGNGNLNYATNPASSDAFGGYGSENSSMGSFGNIGSLWSSSLGANQVGTIGSGYGKGSLSYRSGDVILGSKTVGYGKSNESTVASALPYTLSNGSYDEAYKDNYEAGSFYRDHTWRSSASELEDSGSLSFGFENAVSDLMSNRSGSHIGAYTVANTVK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01146 471 CDD RRM2_Hrp1p 109 186 - -
Rops11g01146 471 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Rops11g01146 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Rops11g01146 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Rops11g01146 471 SMART rrm1_1 109 181 IPR000504 GO:0003723
Rops11g01146 471 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 466 - -
Rops11g01146 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 105 192 - -
Rops11g01146 471 Gene3D - 105 191 IPR012677 -
Rops11g01146 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Rops11g01146 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 168 IPR000504 GO:0003723
Rops11g01146 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Rops11g01146 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Rops11g01146 471 SUPERFAMILY RNA-binding domain, RBD 101 206 IPR035979 GO:0003676
Rops11g01146 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Rops11g01146 471 Gene3D - 5 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01146 Rops-Chr11 16791239 16795542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01146 8 187 Eukaryotic Initiation Factors Gene Family AT2G36660 29.255 8.02e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01146 K14411 - cave:132171089 630.557