Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01119 ATGGCTGGCTCATGTTTCCACGGGCTTCGCTTGAGAAGGTCAAAGAGTAGACCTTTACCAGCACCTTCATCTTCTTCCAAGACCAAGTATGATTCTGACATGGAGAACACGGAAAGGAAGAGATTTGATAGCATGGAATCATGGTCCATGATATTGGAATCTGAGAATTTTGAGACATGGGAGACTTCAAAGGAGGACCGAGAGGAATGGACTGCAGATCTATCACAGCTTTTCCTAGGTAACAAGTTTGCTTCAGGGGCTCACAGTAGGATTTACCGTGGAATCTACAAGCAGAAAGCTGTTGCTGTGAAAATGGTGAGGATTCCAACCCAGGACGACGAGAGAAGAACCTTACTTGAGCAGCAATTTAAGTCTGAAGTGGCTTTACTTTCACGTCTCTATCATCCTAACATAGTGCAGTTTATTGCAGCATGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGATAGAGCCATACTCACTTTCAATAGAAACAATACTAAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCACTCACAAGGTGTGATTCATAGAGACCTGAAGTCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTGGCAGATTTTGGCACATCCTGTCTTGAAACAAAATGCCGGGAGACCAAAGGAAACATGGGAACATATCGTTGGATGGCACCAGAGATGATCAAGGAAAAACCTTACACTCGTAAAGTTGATGTGTATAGTTTTGGTATTGTGCTTTGGGAGCTCACAACTGCTCTACTTCCCTTCCAAGGAATGACCCCAGTGCAAGCTGGTTTTGCTGTGGCCGAGAAGAATGAAAGGCCTCCACTGCCAGCTAGTTGCCAACCTGCACTAGCACATTTGATAAAGCGTTGTTGGTCAGCAAATCCCTCAAAGAGGCCAGATTTCAGTGATATTGTGTCTGCTTTGGAGAAGTACGATGAGTGTGTGAAGGAGGGCCTACCTTTATCTCATCATTCAGGGTTAGTCAGCAGAAATGTAATTATTGAACGTCTAAAAGGTTGTGTTTCCATGAGCTCCTCCATACCTGTACATGCCTGA 1125 0.4373 MAGSCFHGLRLRRSKSRPLPAPSSSSKTKYDSDMENTERKRFDSMESWSMILESENFETWETSKEDREEWTADLSQLFLGNKFASGAHSRIYRGIYKQKAVAVKMVRIPTQDDERRTLLEQQFKSEVALLSRLYHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKIEPYSLSIETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETKCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAGFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVSALEKYDECVKEGLPLSHHSGLVSRNVIIERLKGCVSMSSSIPVHA* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01119 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Rops11g01119 374 MobiDBLite consensus disorder prediction 1 38 - -
Rops11g01119 374 Pfam Protein tyrosine and serine/threonine kinase 79 331 IPR001245 GO:0004672|GO:0006468
Rops11g01119 374 PRINTS Tyrosine kinase catalytic domain signature 239 249 IPR001245 GO:0004672|GO:0006468
Rops11g01119 374 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672|GO:0006468
Rops11g01119 374 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Rops11g01119 374 PRINTS Tyrosine kinase catalytic domain signature 193 211 IPR001245 GO:0004672|GO:0006468
Rops11g01119 374 PRINTS Tyrosine kinase catalytic domain signature 155 168 IPR001245 GO:0004672|GO:0006468
Rops11g01119 374 SMART serkin_6 77 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01119 374 CDD STKc_MAP3K-like 84 331 - -
Rops11g01119 374 ProSiteProfiles Protein kinase domain profile. 77 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01119 374 FunFam Serine/threonine-protein kinase isoform 1 67 159 - -
Rops11g01119 374 SUPERFAMILY Protein kinase-like (PK-like) 50 331 IPR011009 -
Rops11g01119 374 Gene3D Transferase(Phosphotransferase) domain 1 160 348 - -
Rops11g01119 374 Gene3D Phosphorylase Kinase; domain 1 66 159 - -
Rops11g01119 374 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 70 334 - -
Rops11g01119 374 FunFam serine/threonine-protein kinase HT1 160 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01119 Rops-Chr11 16360579 16364654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01119 1 374 MAP Kinase Kinase Kinase AT1G62400 81.282 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Rops11g01119 PK_Tyr_Ser-Thr 1.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01119 - - gmx:100799437 687.182