Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01110 ATGAGTCAACTCGGTGTGATATTGCAGGAATCGGTGCGGACTCAGAGGGAGCCAAGAACGATTCTTGGTTTGTTGAGGGAGCAAATTGACGGTGTAGATGGAGTGCCTCGCAGGAGGCGTAGCTTCAAGGAACGGCTAGGATTCATTGGCATGGGTTGTTGTGGGGCCACTTGGGGATTCCGTTCCAACGCTCTAACCGTCAGACATCACGGGGAACAACAACCACCACCCCTACAGCAGCAGCCGGAAACGGATCCGAACCCGAATCCATCTGAAGGACATGGATGTGTCCGCCCGACTCCGGCTGGTTCGTCGGGTATGAACCTTGCGGCGGCGTTGGCGGCGGAGAGACAACTCCGGGGACCGCCGGAGGGATCGGGTGAGAGAGGAGGCAGGGCGCCAGGGACGCCGTGGAGGGTGTCGCTGATGCGGCTGCTGGAGGAGAAGGAAGGCGGGGACACGGCGGTGACGGAGGAGGAGAAAGGAGGAGGGACGGTGGGGTATGATTGTGTGTGTTGCGTGTGCATGGGGAGGAATAAAGGCGCGGCATTCATCCCATGTGGGCACACTTTTTGCAGGGTGTGTTCCAGGGAACTGTGGCTGAATCGAGGTTCTTGTCCCCTTTGTAATCGGAACATCCTCGAGATTCTCGACATTTTCTAG 663 0.5807 MSQLGVILQESVRTQREPRTILGLLREQIDGVDGVPRRRRSFKERLGFIGMGCCGATWGFRSNALTVRHHGEQQPPPLQQQPETDPNPNPSEGHGCVRPTPAGSSGMNLAAALAAERQLRGPPEGSGERGGRAPGTPWRVSLMRLLEEKEGGDTAVTEEEKGGGTVGYDCVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRNILEILDIF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01110 220 PANTHER OS01G0917900 PROTEIN 4 220 - -
Rops11g01110 220 ProSiteProfiles Zinc finger RING-type profile. 172 210 IPR001841 -
Rops11g01110 220 MobiDBLite consensus disorder prediction 70 102 - -
Rops11g01110 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 219 IPR013083 -
Rops11g01110 220 SUPERFAMILY RING/U-box 171 217 - -
Rops11g01110 220 SMART ring_2 172 209 IPR001841 -
Rops11g01110 220 Pfam Zinc finger, C3HC4 type (RING finger) 170 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01110 Rops-Chr11 16205972 16207039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01110 21 220 C3H Transcription Factor Family AT4G22250 52.153 1.04e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01110 - - gmx:106799504 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01110 11 16205972 16207039 Rops11g01110 11 16205972 16207039 ECH