Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01108 ATGGCATCCTCCCCAAATCTCCTCAGTGGGTATCGATTTCCCATCACTGTTGAAGTGATGAATGATGGTCGAAAGGGACATGTGCCATGGCGTATAGCTGCGGAATTCAGGCTTCTAATCGAAAGAAATCCTACTATCAGTACTACTGATGGGAATGTCTTTGAGGTTCGATTCTTGATGAATCTCAATGAAGGAGTTTTCACCAACAATTGGACTTCATTCAATGAGAAAGACCGAGAAGGATATGGTACCATTCAAACTCGAACCAAAAGGATCAAAACCGACGAAGATCAAAACCAATCTGACACGAAGGAGGTATTTGGTCACCTAAGACTGACTGCTTATAGTACAACAAACAACCATCAGAATCTGCCTTCATCCTTTGTTCAAGCCTGCTTGAACAAAAAATGTAAATATGTGCTGCTGGAGATTGAGGACGGTAGAATTTGGCATTTGGGACTTTATGCACCAGAAACAAGGCCGAATACAGCACGATTCTCTTCAGGGTGGAAGATGTTTTGTGATGAGCTGGAGTTGAAGGCAGAGGACCGTATCATCCTCAAAATACATGACAGATCAAAGAACCATCTCCTTGCTCACATTGAACGTCTGTGA 615 0.4276 MASSPNLLSGYRFPITVEVMNDGRKGHVPWRIAAEFRLLIERNPTISTTDGNVFEVRFLMNLNEGVFTNNWTSFNEKDREGYGTIQTRTKRIKTDEDQNQSDTKEVFGHLRLTAYSTTNNHQNLPSSFVQACLNKKCKYVLLEIEDGRIWHLGLYAPETRPNTARFSSGWKMFCDELELKAEDRIILKIHDRSKNHLLAHIERL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01108 204 CDD B3_DNA 112 203 IPR003340 GO:0003677
Rops11g01108 204 ProSiteProfiles B3 DNA-binding domain profile. 107 204 IPR003340 GO:0003677
Rops11g01108 204 Gene3D - 86 204 IPR015300 -
Rops11g01108 204 SUPERFAMILY DNA-binding pseudobarrel domain 109 201 IPR015300 -
Rops11g01108 204 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 86 193 IPR039218 -
Rops11g01108 204 Pfam B3 DNA binding domain 112 201 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01108 Rops-Chr11 16181760 16182674 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops11g01108 B3 2.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01108 - K00287 hsyr:120140694 53.5286