Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01104 ATGGAGCGGCTCGCTCGAGCGTTGCGTTCGCGTTTTCGTTCATTTCACTCTTTTCAAACCCTAACTTCTCACTCTTCACGCCGCCTTCACCGTTCTCTCTATTCCAAATCTGTAACTGTTTGCTCCAACTCCTCCTCCGTGTGTGATGTTTCGAGTTCGAGAGTCATGCTTGAGGATCGGGGAGCATATTCATTGCTTCCAGCTGTGTTGGCCGGTATTTTAGGAGTTGGATTGGTGGAAACGACGGCGTATGCGGATCATGCGAATGAGGAGGTACAAGAGATGGCTAAGAAAGAACGACAGCGAATTGAGGAGTTGCTTAGAAGTAGGGGAATTCGACATGGTTCTTATCCTCGCTTCACTGTTGCTGTTAAAGGCCAAAAGGTCAGTATTAAGTTTCAAATTCCTCCTAGTTGTGAAATTTCACAACTTATTGCAAATATCACTGCACATCTTGGACTGAAAGCTGAAGGGCATGGTGGTGGTTCAGATATGTCATTGCGTGCTTGGGACAGCACAGTTGCTTGGCAACTTGCCCTTACTCATCCACCAAAGCAAAAACATATTCAAGAGAATGATCCAGCTTCAACAGATATAAAGGCACATGATAGAGATCTATGCGTACTTATCTTTCATTCTCTCATTGGCTCAGATAAAGCTGAGATTGAATTTATTAAGCAAGGGAACTTGAGTTCCGAAGAGCTTGATGCTTTCGTCTCTGTTTTACAATTAGCTGGTAACAAGTTGGGACAAAGAAGCACCCTGGAAAGAAAGCCAAGGGAAGGGATCGAACAGGTGCCATCTGTAGATAAATCTATTTCTAGTCTTGAAGCCATGGGAGTAAGAATTTATGGACTCAATGAACCCATTGGTATATCAAATGGTGAGATATCGTGGGACATCATTGCTGGGTATGAACCTCAAAAACGAATAATAGAAGATACAATACTATTGGCTTTGCAAAGTCCTGAAGTATACGATGATGTTGCTCGAGGGACTCGTCATAAGTTTGAGTCGAACAGACCTCGAGCTGTGCTGTTTGAAGGTCCACCAGGTACAGGGAAAACTTCCTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTGCTATATGTGCCACTTGAGGTGGTAATGTCTGAATTCTACGGTAAAAGTGAACGCCTTCTAGGGCAAGTGTTTTCGCTTGCAAACGATATTCCTAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGTTGCTCGTGATGGTGAAATGCATGAAGCTACACGCAGAATATTGTCAGTATTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTCATTGCTGCCACAAATAGGAAGGAAGACCTTGATCCTGCATTAATTAGTCGGTTTGATACTATGATCACTTTTGGCCTACCTGATCATCATAATCGTATGGAAATAGCATCCAAATATGCAAAACACCTGTCCAAAGCTGAACTTGATGAACTTGCAAGAGTTACAGAAGACATGTCTGGAAGAGATATTAGAGATGTTTGTCTGCAAGCAGAACGATGCTGGGCATCTAAGATTATTCGAGGACAAGTATCTAAAGATGGCGAACAAGCGATCCTTCCACCTTTGCAGGAGTATATAGCGAATGCCACGAATCGACGGGAAGCACTGCTTAGTGCTGCTGCAAATAGGAAGCTCCAAAGTTCTTCCCGCCGCAGGATATTAAGTGATGAATAA 1737 0.4329 MERLARALRSRFRSFHSFQTLTSHSSRRLHRSLYSKSVTVCSNSSSVCDVSSSRVMLEDRGAYSLLPAVLAGILGVGLVETTAYADHANEEVQEMAKKERQRIEELLRSRGIRHGSYPRFTVAVKGQKVSIKFQIPPSCEISQLIANITAHLGLKAEGHGGGSDMSLRAWDSTVAWQLALTHPPKQKHIQENDPASTDIKAHDRDLCVLIFHSLIGSDKAEIEFIKQGNLSSEELDAFVSVLQLAGNKLGQRSTLERKPREGIEQVPSVDKSISSLEAMGVRIYGLNEPIGISNGEISWDIIAGYEPQKRIIEDTILLALQSPEVYDDVARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEVVMSEFYGKSERLLGQVFSLANDIPNGAIIFLDEIDSFAVARDGEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMITFGLPDHHNRMEIASKYAKHLSKAELDELARVTEDMSGRDIRDVCLQAERCWASKIIRGQVSKDGEQAILPPLQEYIANATNRREALLSAAANRKLQSSSRRRILSDE* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01104 578 CDD RecA-like_protease 330 472 - -
Rops11g01104 578 Coils Coil 89 109 - -
Rops11g01104 578 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 238 519 - -
Rops11g01104 578 ProSitePatterns AAA-protein family signature. 446 465 IPR003960 GO:0005524|GO:0016887
Rops11g01104 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 538 IPR027417 -
Rops11g01104 578 SMART AAA_5 341 476 IPR003593 GO:0016887
Rops11g01104 578 Gene3D - 296 474 IPR027417 -
Rops11g01104 578 Gene3D - 475 535 - -
Rops11g01104 578 Pfam ATPase family associated with various cellular activities (AAA) 345 473 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01104 Rops-Chr11 16111287 16118957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01104 341 518 Calmodulin-binding Proteins AT3G56690 38.172 2.32e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01104 - - gmx:100803362 865.914