Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01102 ATGGAGGGTAGTTCTAATGGCACTTCTTATTTGATGGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTAGTCATCATCCAATAAATCCTAATCCTAATCCTAATAATACTAATGCAAACACAAACTGTCTCTTCCTCCCCATCCCTTCCATTAATAATCACGACCCCAACAGTGGAAACCCTTCTTTCACTCTTGATAATAACCACAACACCACTAACAACAACAACAACACTGGTTTAGGGTATTATTTCATGGAGAGCGACCACCACCACCTCAACAACAATGGAAGCTCCTCTTCCTCTTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTATGTCAATTGTCAAAAGGTTGGAGCACCCCCTGAAGTGGTGGCAAGGTTGGAAGAAGCGTGTGCTTCTGCAGTGACCATGGCAGGTGACACAGTTGGATCAGGTTGCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTGACAAAGTATGAGCAAGAGCTTTCTAAACCCTTAAAGGAAGCCATGCTTTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAACCTTACAATTTCTTCTTCTGACGTTGCTTGTAATGAGGCTACTGATAGGAATGGGTCATCTGAAGATGATGTTGATCTATACAACATCATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTACAGTGGATACTTGGGTAGTCTCAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAGTGGCCTTACCCATCTGAAGCACAGAAGCTGGCTCTTGCAGAGTCCACAGGCCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGGTGGATCCAAGCCATCCACACTATTACATGGACAATGTTCTCAGCAATCCCTTTCCCATGGATCTCTCCAACCCCATGCTCTAG 1113 0.4465 MEGSSNGTSYLMAFGENSGGLCPMMMMPLVTSHHGSHHPINPNPNPNNTNANTNCLFLPIPSINNHDPNSGNPSFTLDNNHNTTNNNNNTGLGYYFMESDHHHLNNNGSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGDTVGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDVACNEATDRNGSSEDDVDLYNIIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSEAQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMDNVLSNPFPMDLSNPML* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01102 370 Pfam KNOX2 domain 169 216 IPR005541 GO:0003677|GO:0005634
Rops11g01102 370 SUPERFAMILY Homeodomain-like 274 350 IPR009057 -
Rops11g01102 370 SMART KNOX1_2 115 159 IPR005540 GO:0003677|GO:0005634
Rops11g01102 370 SMART ELK_2 252 273 IPR005539 GO:0003677
Rops11g01102 370 Pfam KNOX1 domain 116 155 IPR005540 GO:0003677|GO:0005634
Rops11g01102 370 SMART HOX_1 274 339 IPR001356 GO:0003677
Rops11g01102 370 Pfam ELK domain 252 273 IPR005539 GO:0003677
Rops11g01102 370 ProSitePatterns 'Homeobox' domain signature. 310 333 IPR017970 GO:0000981|GO:0006355
Rops11g01102 370 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Rops11g01102 370 CDD homeodomain 284 336 IPR001356 GO:0003677
Rops11g01102 370 Gene3D - 277 339 - -
Rops11g01102 370 FunFam Homeobox protein knotted-1-like 2 277 339 - -
Rops11g01102 370 SMART KNOX2_2 166 217 IPR005541 GO:0003677|GO:0005634
Rops11g01102 370 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677
Rops11g01102 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 341 - -
Rops11g01102 370 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01102 Rops-Chr11 16075646 16081621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01102 94 370 Homeobox Transcription Factor Family AT1G62360 76.817 1.94e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops11g01102 KNOX2 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01102 - - gmx:100805837 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01102 11 16075646 16081621 Rops11g01102 11 16075646 16081621 ECH
Rops2g04690 2 85224830 85230621 Rops11g01102 11 16075646 16081621 PCT