Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops11g01080 | ATGGCCACTTTAACCACTCTCCTAGTGTTCTCATGCTTTCTACCTACCTTAGCTTCAAAACTGAATGCAGATTCAACAAAGGTTCCCTATATTCCAAACTATAACCCCAATCCTGAGAATGTTGTCATGAACACAATAGACTCATGCTGGCGAGCCAAAACAAATTGGGCTTCAAACCGTCAATCCTTAGCTGATTGTGCAATTGGCTTTGGCAAAGATGCTATTGGAGGGAAATTTGGTGAAATATATGAAGTCACTGATCCCTCTGATGACCCCATAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAACAACACCCCTTTGGATAACTTTCACCAAAGACATGGTTATCACACTAAAGAATGAGCTTATGGTGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAAAGTGGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTCATTATTCATGGTATTAGCATTCATGATTGTAAACCAGGTAAGGCTGCCATGGTGAGGAGTACTCCAGATCATGTTGGGCAACGTGAAGGCTCTGATGGAGATGCCATTAGTATATTTGCTTCATCAAATATCTGGATTGATCATTGCTTTTTGGCTCGTTGCACTGATGGTCTCATTGATGTTATACATGCCTCAACTGCAGTCACCATCTCAAACAATTACTTCACCCAGCATGATAAAGTGATGTTGCTAGGACACAACGATGAATACAGCGCGGATAAAATAATGAAAGTAACAGTAGCTTTCAACCGCTTTGCCAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACCGGTATGACGAGTGGCTCATGTATGCCATTGGTGGCAGTGCCGACCCAACCATTTTCAGTCAAGGGAACTACTTTATAGCTTCAAATGATTCTGCTGCAAAACAGGTTACTAAGAGGGAAACTAGTAAAAAGTGGAATAGTTGGAAATGGAGGACTTATGGGGATGAATTCATAAATGGTGCTTATTTTGTGCCATCTGGGTACGGAAGTTGTATCCCATCATATTCACCTGCTCAAAACTTTGTCGCAGCCCAAGCATCCATGGTGCCTTTATTAACACTCAATGCAGGGCCACTGGACTGTGTTCTTAATAAAGCATGTTAA | 1173 | 0.4237 | MATLTTLLVFSCFLPTLASKLNADSTKVPYIPNYNPNPENVVMNTIDSCWRAKTNWASNRQSLADCAIGFGKDAIGGKFGEIYEVTDPSDDPINPKPGTLRYGAIQTTPLWITFTKDMVITLKNELMVNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKAAMVRSTPDHVGQREGSDGDAISIFASSNIWIDHCFLARCTDGLIDVIHASTAVTISNNYFTQHDKVMLLGHNDEYSADKIMKVTVAFNRFASGLTERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSQGNYFIASNDSAAKQVTKRETSKKWNSWKWRTYGDEFINGAYFVPSGYGSCIPSYSPAQNFVAAQASMVPLLTLNAGPLDCVLNKAC* | 391 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops11g01080 | 390 | PRINTS | Pollen allergen Amb family signature | 189 | 210 | IPR018082 | - | |
Rops11g01080 | 390 | PRINTS | Pollen allergen Amb family signature | 269 | 288 | IPR018082 | - | |
Rops11g01080 | 390 | PRINTS | Pollen allergen Amb family signature | 331 | 355 | IPR018082 | - | |
Rops11g01080 | 390 | PRINTS | Pollen allergen Amb family signature | 291 | 310 | IPR018082 | - | |
Rops11g01080 | 390 | PRINTS | Pollen allergen Amb family signature | 361 | 384 | IPR018082 | - | |
Rops11g01080 | 390 | PRINTS | Pollen allergen Amb family signature | 125 | 141 | IPR018082 | - | |
Rops11g01080 | 390 | PRINTS | Pollen allergen Amb family signature | 89 | 114 | IPR018082 | - | |
Rops11g01080 | 390 | PRINTS | Pollen allergen Amb family signature | 66 | 83 | IPR018082 | - | |
Rops11g01080 | 390 | SUPERFAMILY | Pectin lyase-like | 43 | 381 | IPR011050 | - | |
Rops11g01080 | 390 | SMART | amb_all | 117 | 314 | IPR002022 | - | |
Rops11g01080 | 390 | Pfam | Pectate lyase | 123 | 308 | IPR002022 | - | |
Rops11g01080 | 390 | Gene3D | - | 43 | 383 | IPR012334 | - | |
Rops11g01080 | 390 | PANTHER | PECTATE LYASE 18-RELATED | 40 | 386 | IPR045032 | GO:0030570 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops11g01080 | Rops-Chr11 | 15879985 | 15882328 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops11g01080 | 6 | 390 | Polysaccharide Lyase | AT4G22080 | 67.092 | 0.0 | 550 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops11g01080 | K01728 | - | gmx:100803229 | 676.011 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops2g04705 | 2 | 85361338 | 85362810 | Rops11g01080 | 11 | 15879985 | 15882328 | PCT |