LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g01080	ATGGCCACTTTAACCACTCTCCTAGTGTTCTCATGCTTTCTACCTACCTTAGCTTCAAAACTGAATGCAGATTCAACAAAGGTTCCCTATATTCCAAACTATAACCCCAATCCTGAGAATGTTGTCATGAACACAATAGACTCATGCTGGCGAGCCAAAACAAATTGGGCTTCAAACCGTCAATCCTTAGCTGATTGTGCAATTGGCTTTGGCAAAGATGCTATTGGAGGGAAATTTGGTGAAATATATGAAGTCACTGATCCCTCTGATGACCCCATAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAACAACACCCCTTTGGATAACTTTCACCAAAGACATGGTTATCACACTAAAGAATGAGCTTATGGTGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAAAGTGGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTCATTATTCATGGTATTAGCATTCATGATTGTAAACCAGGTAAGGCTGCCATGGTGAGGAGTACTCCAGATCATGTTGGGCAACGTGAAGGCTCTGATGGAGATGCCATTAGTATATTTGCTTCATCAAATATCTGGATTGATCATTGCTTTTTGGCTCGTTGCACTGATGGTCTCATTGATGTTATACATGCCTCAACTGCAGTCACCATCTCAAACAATTACTTCACCCAGCATGATAAAGTGATGTTGCTAGGACACAACGATGAATACAGCGCGGATAAAATAATGAAAGTAACAGTAGCTTTCAACCGCTTTGCCAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACCGGTATGACGAGTGGCTCATGTATGCCATTGGTGGCAGTGCCGACCCAACCATTTTCAGTCAAGGGAACTACTTTATAGCTTCAAATGATTCTGCTGCAAAACAGGTTACTAAGAGGGAAACTAGTAAAAAGTGGAATAGTTGGAAATGGAGGACTTATGGGGATGAATTCATAAATGGTGCTTATTTTGTGCCATCTGGGTACGGAAGTTGTATCCCATCATATTCACCTGCTCAAAACTTTGTCGCAGCCCAAGCATCCATGGTGCCTTTATTAACACTCAATGCAGGGCCACTGGACTGTGTTCTTAATAAAGCATGTTAA	1173	0.4237	MATLTTLLVFSCFLPTLASKLNADSTKVPYIPNYNPNPENVVMNTIDSCWRAKTNWASNRQSLADCAIGFGKDAIGGKFGEIYEVTDPSDDPINPKPGTLRYGAIQTTPLWITFTKDMVITLKNELMVNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKAAMVRSTPDHVGQREGSDGDAISIFASSNIWIDHCFLARCTDGLIDVIHASTAVTISNNYFTQHDKVMLLGHNDEYSADKIMKVTVAFNRFASGLTERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSQGNYFIASNDSAAKQVTKRETSKKWNSWKWRTYGDEFINGAYFVPSGYGSCIPSYSPAQNFVAAQASMVPLLTLNAGPLDCVLNKAC*	391

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops11g01080	390	PRINTS	Pollen allergen Amb family signature	189	210	IPR018082	-
Rops11g01080	390	PRINTS	Pollen allergen Amb family signature	269	288	IPR018082	-
Rops11g01080	390	PRINTS	Pollen allergen Amb family signature	331	355	IPR018082	-
Rops11g01080	390	PRINTS	Pollen allergen Amb family signature	291	310	IPR018082	-
Rops11g01080	390	PRINTS	Pollen allergen Amb family signature	361	384	IPR018082	-
Rops11g01080	390	PRINTS	Pollen allergen Amb family signature	125	141	IPR018082	-
Rops11g01080	390	PRINTS	Pollen allergen Amb family signature	89	114	IPR018082	-
Rops11g01080	390	PRINTS	Pollen allergen Amb family signature	66	83	IPR018082	-
Rops11g01080	390	SUPERFAMILY	Pectin lyase-like	43	381	IPR011050	-
Rops11g01080	390	SMART	amb_all	117	314	IPR002022	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g01080	Rops-Chr11	15879985	15882328	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g01080	6	390	Polysaccharide Lyase	AT4G22080	67.092	0.0	550

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g01080	K01728		-	gmx:100803229	676.011

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g04705	2	85361338	85362810	Rops11g01080	11	15879985	15882328	PCT

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