Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01080 ATGGCCACTTTAACCACTCTCCTAGTGTTCTCATGCTTTCTACCTACCTTAGCTTCAAAACTGAATGCAGATTCAACAAAGGTTCCCTATATTCCAAACTATAACCCCAATCCTGAGAATGTTGTCATGAACACAATAGACTCATGCTGGCGAGCCAAAACAAATTGGGCTTCAAACCGTCAATCCTTAGCTGATTGTGCAATTGGCTTTGGCAAAGATGCTATTGGAGGGAAATTTGGTGAAATATATGAAGTCACTGATCCCTCTGATGACCCCATAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAACAACACCCCTTTGGATAACTTTCACCAAAGACATGGTTATCACACTAAAGAATGAGCTTATGGTGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAAAGTGGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTCATTATTCATGGTATTAGCATTCATGATTGTAAACCAGGTAAGGCTGCCATGGTGAGGAGTACTCCAGATCATGTTGGGCAACGTGAAGGCTCTGATGGAGATGCCATTAGTATATTTGCTTCATCAAATATCTGGATTGATCATTGCTTTTTGGCTCGTTGCACTGATGGTCTCATTGATGTTATACATGCCTCAACTGCAGTCACCATCTCAAACAATTACTTCACCCAGCATGATAAAGTGATGTTGCTAGGACACAACGATGAATACAGCGCGGATAAAATAATGAAAGTAACAGTAGCTTTCAACCGCTTTGCCAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACCGGTATGACGAGTGGCTCATGTATGCCATTGGTGGCAGTGCCGACCCAACCATTTTCAGTCAAGGGAACTACTTTATAGCTTCAAATGATTCTGCTGCAAAACAGGTTACTAAGAGGGAAACTAGTAAAAAGTGGAATAGTTGGAAATGGAGGACTTATGGGGATGAATTCATAAATGGTGCTTATTTTGTGCCATCTGGGTACGGAAGTTGTATCCCATCATATTCACCTGCTCAAAACTTTGTCGCAGCCCAAGCATCCATGGTGCCTTTATTAACACTCAATGCAGGGCCACTGGACTGTGTTCTTAATAAAGCATGTTAA 1173 0.4237 MATLTTLLVFSCFLPTLASKLNADSTKVPYIPNYNPNPENVVMNTIDSCWRAKTNWASNRQSLADCAIGFGKDAIGGKFGEIYEVTDPSDDPINPKPGTLRYGAIQTTPLWITFTKDMVITLKNELMVNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKAAMVRSTPDHVGQREGSDGDAISIFASSNIWIDHCFLARCTDGLIDVIHASTAVTISNNYFTQHDKVMLLGHNDEYSADKIMKVTVAFNRFASGLTERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSQGNYFIASNDSAAKQVTKRETSKKWNSWKWRTYGDEFINGAYFVPSGYGSCIPSYSPAQNFVAAQASMVPLLTLNAGPLDCVLNKAC* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01080 390 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Rops11g01080 390 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Rops11g01080 390 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Rops11g01080 390 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Rops11g01080 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Rops11g01080 390 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Rops11g01080 390 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Rops11g01080 390 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Rops11g01080 390 SUPERFAMILY Pectin lyase-like 43 381 IPR011050 -
Rops11g01080 390 SMART amb_all 117 314 IPR002022 -
Rops11g01080 390 Pfam Pectate lyase 123 308 IPR002022 -
Rops11g01080 390 Gene3D - 43 383 IPR012334 -
Rops11g01080 390 PANTHER PECTATE LYASE 18-RELATED 40 386 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01080 Rops-Chr11 15879985 15882328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01080 6 390 Polysaccharide Lyase AT4G22080 67.092 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01080 K01728 - gmx:100803229 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04705 2 85361338 85362810 Rops11g01080 11 15879985 15882328 PCT