Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01078 ATGGACAAAGGATGGGGTCTCACTCTTGATTCTTCTTCCTCTCAATCCCTTCCTTTCTTTCCTTCCAAACAGCCACCTTCTGCATCTGTGAATCCTTTCTCTAAACTCACCCACGATAAAATGTTCCCCCTTTTGGGATTTCCTGTCAACCTTAGCCGCACCACCAACAAGGAAGACGATGACCACAACACTGATGATAACCGGAAGGTGGTCGGTGAAGTTGACTTCTTCTCTGAAAAAAACAAGTCATCACCTCCAAACCATGACCATCACCGATATGTTAAACCCAACATCTCCATCAAGAAGGAGATTGCTCCCGATGAAAAACCTCCCAACTCTAATCTCCTCGTAAATACTGGTTTGCAACTCCTTACTGCTAACACTGGGAGTGACCAATCTACGGTGGATGATGGGATTTCATCAGATGCTGAAGATAAGCGAGCTAAGACAACTGAGCTTGGGCAGTTGCAAGTGGAGCTTCAACGAATGAATGCAGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTGAGCGGTAACTACACGGCCTTGCAGATGCATCTTGTGGCATTAATGCAAAAGAACCAGCGTGCAGAGAGCACAGAAAATGAGGTTGTTCAAGGAAAACCTGAGGAGAAAAACCATGGTGTTGGTGGAGGAATGGTACCAAGACAATTCCTTGATATAGGTCCTAGTGGCACAGCCGAAGTAGATGATCGAGTATCCAATTCTTCTTCCGATGAAAGAACACGATCGAGCACACCTCAGAACAATCATATTGAAGCTTCAACAAGAGATCACATGAGAAATAACAATGGTAAACATGAGTTGGGTAGGGAAGAGAGTACTACAGACTCAGAATCACAAGGTTGGGCTCCCAACAAACTTCAGAAACTGAACACCTCTAATCCTATGGATCAATCCACCACAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTTCCATGATCAGTGATGGATGCCAATGGAGAAAATATGGGCAAAAAATGGCAAAGGGAAACCCATGTCCTAGAGCATATTATAGATGCACTATGGCAGTTGGTTGCCCGGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACAATTTTGGTAACAACATATGAAGGCACACATAATCATCCATTGCCACCTGCTGCTATGGCCATGGCATCAACCACAGCAGCTGCTGCTAGCATGTTATTGGCAGGGTCAATGTCAAGTGCTGATGGGATAATGAACCCCAATTTGTTAGCAAGAGCTATTCTTCCTTGTTCTTCTAACATGGCAACACTTTCAGCTTCAGCACCATTTCCCACTGTGACATTAGACCTCACACATAACCAAAACCCATTGCAATTCCAAAGACCTTCTGCACCATTCCAAGTACCCTTCCTCCCAGGGCAGCCTCAGAACTTGGGATCCGGAGCCACCCCATTTGCACAAGCACTTTATAACCAATCCAAATTCTCCGGTCTTCAATTGTCTCAGGAAGTGGGATCTTCCCAAGTGGCCCCTCAATTTCCAACACCACCCTCACAGCCAACCCAACAGCCATCTATGGTTGACACAGTCAGCGCCGCCACGGCAGCCATCACAGCCGACCCTAACTTCACGGCTGTGCTGGCGGCCGCCATCTCCTCCATCATCGGTGGTGCTCATTCAAACAACAACGGTCCCAACAACAACAACAACACCAACAGGACTACAGTTAGCAACTTTTTAGGAAACTAA 1755 0.4644 MDKGWGLTLDSSSSQSLPFFPSKQPPSASVNPFSKLTHDKMFPLLGFPVNLSRTTNKEDDDHNTDDNRKVVGEVDFFSEKNKSSPPNHDHHRYVKPNISIKKEIAPDEKPPNSNLLVNTGLQLLTANTGSDQSTVDDGISSDAEDKRAKTTELGQLQVELQRMNAENKKLKEMLSHVSGNYTALQMHLVALMQKNQRAESTENEVVQGKPEEKNHGVGGGMVPRQFLDIGPSGTAEVDDRVSNSSSDERTRSSTPQNNHIEASTRDHMRNNNGKHELGREESTTDSESQGWAPNKLQKLNTSNPMDQSTTEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTAAAASMLLAGSMSSADGIMNPNLLARAILPCSSNMATLSASAPFPTVTLDLTHNQNPLQFQRPSAPFQVPFLPGQPQNLGSGATPFAQALYNQSKFSGLQLSQEVGSSQVAPQFPTPPSQPTQQPSMVDTVSAATAAITADPNFTAVLAAAISSIIGGAHSNNNGPNNNNNTNRTTVSNFLGN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01078 584 MobiDBLite consensus disorder prediction 262 283 - -
Rops11g01078 584 MobiDBLite consensus disorder prediction 7 32 - -
Rops11g01078 584 MobiDBLite consensus disorder prediction 128 148 - -
Rops11g01078 584 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 126 570 IPR044810 GO:0003700
Rops11g01078 584 Pfam WRKY DNA -binding domain 332 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01078 584 MobiDBLite consensus disorder prediction 1 32 - -
Rops11g01078 584 SMART WRKY_cls 330 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01078 584 Coils Coil 146 180 - -
Rops11g01078 584 Gene3D WRKY domain 315 392 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g01078 584 MobiDBLite consensus disorder prediction 508 528 - -
Rops11g01078 584 FunFam probable WRKY transcription factor 31 315 392 - -
Rops11g01078 584 MobiDBLite consensus disorder prediction 284 315 - -
Rops11g01078 584 ProSiteProfiles WRKY domain profile. 325 391 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01078 584 MobiDBLite consensus disorder prediction 561 584 - -
Rops11g01078 584 SUPERFAMILY WRKY DNA-binding domain 323 391 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g01078 584 MobiDBLite consensus disorder prediction 247 261 - -
Rops11g01078 584 MobiDBLite consensus disorder prediction 199 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01078 Rops-Chr11 15843862 15846403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01078 1 571 WRKY Transcription Factor Family AT1G62300 51.876 2.77e-160 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops11g01078 WRKY 7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01078 - - ccaj:109803638 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01078 11 15843862 15846403 Rops11g01078 11 15843862 15846403 ECH
Rops7g00842 7 11249712 11252373 Rops11g01078 11 15843862 15846403 ECH
Rops3g01218 3 17261134 17263981 Rops11g01078 11 15843862 15846403 ECH