Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01077 ATGTGCAAAGCAAGATCCGAAGGAGTTTCGGGCTTAGGCAGCACTGGGAAGCAATGTGAGTATGGTAGTAAGAAAGCAGGCTGGGGTTATCATAAGACAGGACCCAAAATGAAAATGGACGCGGCATTTGCACAAAGCCCATGTAGCTTTTGTTATGGGCTACTCTTGTTGGTGAACATGGGAAACAAGTTCAATGTGGTCGTGTCGTGTTTGTGTCTGTTGTTTTGTCTGGTCTCTTGTGCATCCAATGATGGATTGCGTAGGATTGGACTGAAAAAGATCAAATTGGGCTCCGAGGACCTTTTGGTGTCCAAGAATGCTGAGTCTTTACGGTCTTCCATTAGAAAGTGTCCCTTTCAAAACATCCTTGGAGCCACTGAGGATGCTGATGTTGTTGCACTCAAGAATTACTTGGATGCTCAGTACTATGGTGAAATTTCCATTGGTACCCCTCCTCAGAAATTCACTGTAATTTTTGACACGGGCAGCTCCAATATGTGGGTGCCATCAGCTAAATGTTACTTCTCGGTTGCATGCTACCTCCATGCCAAGTACAGGTCTAGCCAATCAAGTACCTACAGGGAAAATGGGACTTCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCTATGACAATGTCAGAGTTGGTGACGTAGTTGTAAAGGACCAGGAATTTATTGAAGCAACTAGAGAGCCTGGAGTTACATTTGTGGCCGCTAAGTTCGATGGTTTGCTAGGACTTGGATTTCAAGAAATATCAGTTGGAAAGGCTGTTCCAGTGTGGTACAGTATGGTTAAACAAGGTCTTGTTAAGGAACCAGTATTTTCATTTTGGCTCAATCGTAATCAACAAGAAGAGGAAGGAGGTGAGATTGTTTTTGGTGGTGTTGATCCTGCTCACTTCAAGGGTAAACATACTTACGTGCCGGTGACACGAAAAGGATATTGGCAGTTTGACATGGGAGATGTACTTATTGGTGGTAAACCCACTGGATATTGTGCTAATGGTTGTTCAGCAATTGCAGACTCAGGGACATCTTTGTTGGCAGGTCCATCGACTGTGATTACTATGATAAATCAAGCAATTGGAGCATCTGGAGTTGTAAGCAAAGAATGCAAGTCCGTTGTTGAACAGTATGGACAAACAATCTTGGAATTGCTTGTGGCTGAAGCACAGCCAAAGAAGATCTGCTCCCAAATTGGATTGTGCACCTTTGATGGGACTCGTGGCGTTAGTATGGGTATCGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCCAATGGCTTTCGAGATGCTACTTGTTCTGCATGTGAGATGGCTGTTTTTTGGACGCAGAACCAGCTGAGGCAGAATCAGACACAAGATCGGATAATAAACTATATCAATGAGCTTTGTGATAAAATGCCTAACCCAATGGGACAATCAGCTGTTGACTGTGGAAAGATCCCTTCAATGCCTATTGTTTCCTTCACCATCGGCGGAAAGGTTTTTGACCTTGCCCCACAGGAGTACATACTGAAGGTGGGCGAAGGTGCTCAAGCCCAATGCATTAGTGGCTTTACTGCTTTGGATATTCCTCCTCCACGTGGCCCACTCTGGATCCTTGGAGATATCTTCATGGGACGCTATCACACAGTCTTTGATTATGGTAATCTGAGAGTGGGATTTGCCAAAGCAGCATAG 1701 0.4421 MCKARSEGVSGLGSTGKQCEYGSKKAGWGYHKTGPKMKMDAAFAQSPCSFCYGLLLLVNMGNKFNVVVSCLCLLFCLVSCASNDGLRRIGLKKIKLGSEDLLVSKNAESLRSSIRKCPFQNILGATEDADVVALKNYLDAQYYGEISIGTPPQKFTVIFDTGSSNMWVPSAKCYFSVACYLHAKYRSSQSSTYRENGTSAAIQYGTGAISGFFSYDNVRVGDVVVKDQEFIEATREPGVTFVAAKFDGLLGLGFQEISVGKAVPVWYSMVKQGLVKEPVFSFWLNRNQQEEEGGEIVFGGVDPAHFKGKHTYVPVTRKGYWQFDMGDVLIGGKPTGYCANGCSAIADSGTSLLAGPSTVITMINQAIGASGVVSKECKSVVEQYGQTILELLVAEAQPKKICSQIGLCTFDGTRGVSMGIESVVDKNERKSSNGFRDATCSACEMAVFWTQNQLRQNQTQDRIINYINELCDKMPNPMGQSAVDCGKIPSMPIVSFTIGGKVFDLAPQEYILKVGEGAQAQCISGFTALDIPPPRGPLWILGDIFMGRYHTVFDYGNLRVGFAKAA* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01077 566 Gene3D Acid Proteases 87 300 IPR021109 -
Rops11g01077 566 Gene3D - 372 475 - -
Rops11g01077 566 Pfam Eukaryotic aspartyl protease 141 565 IPR033121 -
Rops11g01077 566 SUPERFAMILY Acid proteases 69 565 IPR021109 -
Rops11g01077 566 CDD phytepsin 132 564 IPR033869 GO:0004190
Rops11g01077 566 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 344 355 IPR001969 GO:0004190|GO:0006508
Rops11g01077 566 ProSiteProfiles Peptidase family A1 domain profile. 142 563 IPR033121 -
Rops11g01077 566 ProSiteProfiles Saposin B type domain profile. 436 477 IPR008139 -
Rops11g01077 566 FunFam Vacuolar aspartic proteinase 437 565 - -
Rops11g01077 566 FunFam Aspartic proteinase A1 372 475 - -
Rops11g01077 566 PRINTS Pepsin (A1) aspartic protease family signature 148 168 IPR001461 GO:0004190|GO:0006508
Rops11g01077 566 PRINTS Pepsin (A1) aspartic protease family signature 294 307 IPR001461 GO:0004190|GO:0006508
Rops11g01077 566 PRINTS Pepsin (A1) aspartic protease family signature 344 355 IPR001461 GO:0004190|GO:0006508
Rops11g01077 566 PRINTS Pepsin (A1) aspartic protease family signature 539 554 IPR001461 GO:0004190|GO:0006508
Rops11g01077 566 Pfam Saposin-like type B, region 1 439 475 IPR007856 GO:0006629
Rops11g01077 566 ProSiteProfiles Saposin B type domain profile. 372 412 IPR008139 -
Rops11g01077 566 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 74 564 IPR001461 GO:0004190|GO:0006508
Rops11g01077 566 Gene3D Acid Proteases 301 566 IPR021109 -
Rops11g01077 566 FunFam Lysosomal aspartic protease 128 370 - -
Rops11g01077 566 SUPERFAMILY Saposin 373 475 IPR011001 -
Rops11g01077 566 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 157 168 IPR001969 GO:0004190|GO:0006508
Rops11g01077 566 Pfam Saposin-like type B, region 2 375 408 IPR008138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01077 Rops-Chr11 15835159 15842311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01077 K08245 - gmx:100801598 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01077 11 15835159 15842311 Rops11g01077 11 15835159 15842311 ECH
Rops2g04707 2 85403130 85405877 Rops11g01077 11 15835159 15842311 PCT