Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01076 ATGAGCTGGACAAGGGGTCGTACACTTGGCCGAGGCTCCACTGCCACCGTTTACATCGCCGAGGATCACCGGTCCGGTGAGGTGTTCGCCGTGAAGTCTGCGGAGCTTCACAATTCGGAATTCCTCAAGAGGGAACAAGGGATTCTCTCTATGTTGAAGTTTCCTCAAATTGTGGCATACCAAGGTTGTGATGTCACGTTTGAGAACGGTGCACACTGGTTCAACTTGTTCATGGAGTATGCACCTCACGGGACGCTCGCTGATGCAATCAATGGTGGAATGGAAGAAGCCATGGTGGGGTCCTACACGCGCCAAATTCTTCTCGGGTTGAACTACCTCCATTCGAATGGGATAGTACATTGTGACGTGAAGGGACAGAACATGTTGGTAACGGAGCAAGGAGTTAAAATTGCCGACTTGGGTTGTGCTCGGAGGGTGGGTGAGTCGTCGGTGATAGCCGGAACACCGGCGTTCATGGCACCGGAGGTGGCGCGTGGGGACCAACAGGGGTTCCCTGCTGACGTGTGGGCTTTGGGATGTACCGTGCTTGAGATGATCACCGGTAAACCACCGTGGCGCGGCGTTTCCAACGCGTTGGCGGCTCTTTATCGGATCGGGTTCTCCGGCGAGGTGCCTGAGATTCCGGGGTTTGTGTCGGAGCAAGGGAAGGACTTCCTGAGAAAATGCTTAAAGAGGGACCCAAATGATAGGTGGTCTGTGGTTGAGCTTCTCCAACACGGGTTTGTCGGAGAGTGCAAGGAATCAACGTTGGATTCGGACACTCCTACGAGTGTGTTGGAACGAAGCTTTTGGGAATCAATGAACACAAGTATGGGTCCCACATCTAATTATTGTTCCTCGGATTCTTTGAGTGTTCGTGACAGAATTCGCAGGTTGTTTTCGGATGAGCCAGTTTGGGAATGGGATGATGATGAACAATGGGTCACAGTAAGAAGCAATGACAAGGAGTTGGATGTTATGGAAACTGAGGATTCTGAATCAGGCACTGTTTTCCTCCTTAATGATCAAGAGAACAACAGTTTGGTAATTTTTTCTGAACCAAAAATTTTAGCTGCCAATGTAATAGAATTGAGTGTAATTGATGATTGTTACCTTAGCAGCAGCAACTATGACCAGCCCCAGAACAGAAGCCCTAGTTGTCTCTCCTCATCACGTCGCGGTCGTCCTCATCTCGTCGTCGCGTTCTGTCATCCTCACGCCGCCGCGCCGGTCACACACCACCGGTCTCGTCCAGCCTTCTCATCGCGTCCAACAGCCATCACCTCTTGCGATCTCCATCCGGTCCGGAACATTGCTTTAGGAATTGTATCTCGAAGGGTAAACTGGAAACAACTGACTGTTATGGAGACAATTGATAGTAAGTGA 1386 0.5065 MSWTRGRTLGRGSTATVYIAEDHRSGEVFAVKSAELHNSEFLKREQGILSMLKFPQIVAYQGCDVTFENGAHWFNLFMEYAPHGTLADAINGGMEEAMVGSYTRQILLGLNYLHSNGIVHCDVKGQNMLVTEQGVKIADLGCARRVGESSVIAGTPAFMAPEVARGDQQGFPADVWALGCTVLEMITGKPPWRGVSNALAALYRIGFSGEVPEIPGFVSEQGKDFLRKCLKRDPNDRWSVVELLQHGFVGECKESTLDSDTPTSVLERSFWESMNTSMGPTSNYCSSDSLSVRDRIRRLFSDEPVWEWDDDEQWVTVRSNDKELDVMETEDSESGTVFLLNDQENNSLVIFSEPKILAANVIELSVIDDCYLSSSNYDQPQNRSPSCLSSSRRGRPHLVVAFCHPHAAAPVTHHRSRPAFSSRPTAITSCDLHPVRNIALGIVSRRVNWKQLTVMETIDSK* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01076 461 Pfam Protein kinase domain 4 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01076 461 Gene3D Transferase(Phosphotransferase) domain 1 2 298 - -
Rops11g01076 461 SUPERFAMILY Protein kinase-like (PK-like) 3 296 IPR011009 -
Rops11g01076 461 CDD STKc_MAPKKK 2 249 - -
Rops11g01076 461 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Rops11g01076 461 ProSiteProfiles Protein kinase domain profile. 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01076 461 SMART serkin_6 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01076 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Rops11g01076 461 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01076 Rops-Chr11 15825269 15830478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01076 2 372 MAP Kinase Kinase Kinase AT5G55090 43.230 1.71e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops11g01076 Pkinase 3.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01076 K20716 - gmx:100802174 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00844 7 11272036 11273229 Rops11g01076 11 15825269 15830478 ECH
Rops3g01219 3 17281731 17282948 Rops11g01076 11 15825269 15830478 ECH
Rops11g01076 11 15825269 15830478 Rops11g01076 11 15825269 15830478 ECH