Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01069 ATGGATGTCTCGGGGCAGATCAAGCAATCCACATGGCTGGAGATTCCTCAGGAGCAGCCTTTGTTCTGGGCACAGCCAAGAAGACAATGTGAGGTGTATGCTTTCTGTGGTGTATTTGGGAGCTGCACTCAGAACTCTACGCCACACTGTAATTGTGTGAATGGCTATGAGCCAAAGTCACAGCCTGATTGGAATCTGAGGGATTACTCAGGTGGGTGTGTGAAAAAAACCAAGTTTCAATGTGAGACATCCAATCCCTCTAATGGGGCCAAGGACAGGTTCCTAACAATGCCCAACACGGCTTTGCCTGAACATGCACATTTTGTGGGAGCAGGTAATGTTGGGGAATGTGAGTCAACCTGTTTGAACAACTGTTCCTGCACTGCATATGCTTTTAACAGTAGCGGGTGTTCAATTTGGAATGGTGATCTCTTGAATCTGCAACAGATGACACAAGATGATAATACAGGACAGACTTTGTTTCTCAAACTTGCAGCATCTGAGTTTCATGATTCTAAAAGCAATAACGGGACAACCATTGGTGTTGTTGCTGGAGTGGTTGGTAGCATAGTTGTTCTCCTAGCCCTTCTTCTATTTGTCATACTACGAAGAAAGAGACAAGTTTCTATAGCTATAGGGCTTCCCACAGAAGGGTGGTCAAAGGGTGTTTATGATGGTCTTGGAATCATACTTAGTGTGTTATTGGTAGTCTTTGTTACTGCTATCAGTGACTACCAACAATCCCTGCAATTCAGGGATTTGGACAAAGAGAAGAAAAAGATCTTTGTTCAGGTCACCAAGGATGGGAAAAGACAGAAGGTTTCAATTTATGATTTGGTAGTGGGAGATATTGTTCATTTGTCAACCGGTGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATATTCATTGCTAATTGATGAGCAAATAAATGCCAGTTATCCAGAGTTAAATAGCAAGAAAAAGCATTGTTATCAAATAAATCAAATAAACAGAGTCAAATAA 1008 0.4177 MDVSGQIKQSTWLEIPQEQPLFWAQPRRQCEVYAFCGVFGSCTQNSTPHCNCVNGYEPKSQPDWNLRDYSGGCVKKTKFQCETSNPSNGAKDRFLTMPNTALPEHAHFVGAGNVGECESTCLNNCSCTAYAFNSSGCSIWNGDLLNLQQMTQDDNTGQTLFLKLAASEFHDSKSNNGTTIGVVAGVVGSIVVLLALLLFVILRRKRQVSIAIGLPTEGWSKGVYDGLGIILSVLLVVFVTAISDYQQSLQFRDLDKEKKKIFVQVTKDGKRQKVSIYDLVVGDIVHLSTGDQVPADGIYISGYSLLIDEQINASYPELNSKKKHCYQINQINRVK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01069 335 SMART ntp_6 89 164 IPR003609 -
Rops11g01069 335 SUPERFAMILY Hairpin loop containing domain-like 90 148 - -
Rops11g01069 335 Pfam S-locus glycoprotein domain 1 60 IPR000858 GO:0048544
Rops11g01069 335 SUPERFAMILY Calcium ATPase, transduction domain A 262 310 IPR008250 -
Rops11g01069 335 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 220 - -
Rops11g01069 335 Pfam PAN-like domain 89 146 IPR003609 -
Rops11g01069 335 Gene3D - 230 327 - -
Rops11g01069 335 ProSiteProfiles PAN/Apple domain profile. 81 165 IPR003609 -
Rops11g01069 335 CDD PAN_AP_plant 87 165 - -
Rops11g01069 335 Pfam E1-E2 ATPase 262 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01069 Rops-Chr11 15745330 15747491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01069 197 309 Primary Pumps ATPases AT2G41560 69.912 2.18e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01069 - - lja:Lj3g3v2887190.1 300.056