Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01028 ATGATGCAACCAGGACCTGGCATGGCTCCACCCAACATGGGGCAACAACCAACGCAGCAGTATCAGCAACCACCATACGTCATGATGCCGCCGCAGCAGCCTCAGGCGCCGCCGACGATGTGGGCTCCCTCCGCCCAGGCACAACCGCAACCGGCCAGCGCCGATGAAGTCCGTACCCTCTGGATCGGCGATTTACAGTACTGGATGGACGAGAACTATCTCTATACCTGTTTCGCTCACACCGGCGAGGTGACATCTGTGAAAGTGATTAGGAATAAACAAACTAGTCAATCGGAAGGTTATGGTTTTATTGAGTTTAATTCTCGTGCTGGTGCTGAGAGAGTGCTTCAGACATATAATGGAGCTATTATGCCGAATGGTGGTCAGAGTTTTAGGTTGAATTGGGCTACTTTCAGTGTCGGCGAGAGGCGCCATGATGATTCTCCTGATTATACCATATTTGTTGGTGATTTGGCTGCTGATGTTACTGATTATCTCCTTCAGGAGACTTTTAGGACTCGTTATAATTCAGTTAAGGGGGCAAAAGTTGTTATAGATAGGCTTACTGGCCGGACTAAGGGTTATGGCTTTGTTAGATTTGGAGATGAAAGTGAGCAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCCTTGTTCCACAAGACCAATGAGGATTGGACCTGCCACTAATAAAAACCCTGCAACTCAGCCAAAAGCTTCATATCAGAATCCTCAAGGCACACCGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCTGCAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCAGAAGAGTCACTACGGATTTTAAATGGAACACTGTTGGGTGGACAAAATGTTCGTCTGTCATGGGGCCGCAGTCCTTCAAACAAACAGGGTCAGCAGGATTCAAACCAGTGGAATAGTGGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGAAGTTATCCGGGGTATGCGAGTTATCAACCACCTCAGCAACAGCAACAAATAGGATATAGTTGA 1170 0.4658 MMQPGPGMAPPNMGQQPTQQYQQPPYVMMPPQQPQAPPTMWAPSAQAQPQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERVLQTYNGAIMPNGGQSFRLNWATFSVGERRHDDSPDYTIFVGDLAADVTDYLLQETFRTRYNSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVPCSTRPMRIGPATNKNPATQPKASYQNPQGTPNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEESLRILNGTLLGGQNVRLSWGRSPSNKQGQQDSNQWNSGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYASYQPPQQQQQIGYS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01028 389 MobiDBLite consensus disorder prediction 369 389 - -
Rops11g01028 389 MobiDBLite consensus disorder prediction 375 389 - -
Rops11g01028 389 SUPERFAMILY RNA-binding domain, RBD 142 241 IPR035979 GO:0003676
Rops11g01028 389 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 49 332 - -
Rops11g01028 389 MobiDBLite consensus disorder prediction 213 256 - -
Rops11g01028 389 SUPERFAMILY RNA-binding domain, RBD 35 137 IPR035979 GO:0003676
Rops11g01028 389 MobiDBLite consensus disorder prediction 225 256 - -
Rops11g01028 389 FunFam Polyadenylate-binding protein RBP45C 143 234 - -
Rops11g01028 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 328 IPR000504 GO:0003723
Rops11g01028 389 FunFam Polyadenylate-binding protein RBP45 10 142 - -
Rops11g01028 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 215 IPR000504 GO:0003723
Rops11g01028 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 125 IPR000504 GO:0003723
Rops11g01028 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 321 IPR000504 GO:0003723
Rops11g01028 389 Gene3D - 9 142 IPR012677 -
Rops11g01028 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 230 IPR000504 GO:0003723
Rops11g01028 389 SMART rrm1_1 59 134 IPR000504 GO:0003723
Rops11g01028 389 SMART rrm1_1 257 324 IPR000504 GO:0003723
Rops11g01028 389 SMART rrm1_1 152 226 IPR000504 GO:0003723
Rops11g01028 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 138 IPR000504 GO:0003723
Rops11g01028 389 FunFam Polyadenylate-binding protein RBP45C 235 360 - -
Rops11g01028 389 Gene3D - 239 360 IPR012677 -
Rops11g01028 389 MobiDBLite consensus disorder prediction 1 50 - -
Rops11g01028 389 MobiDBLite consensus disorder prediction 12 26 - -
Rops11g01028 389 CDD RRM2_SECp43_like 150 229 - -
Rops11g01028 389 CDD RRM1_SECp43_like 59 139 - -
Rops11g01028 389 Gene3D - 143 238 IPR012677 -
Rops11g01028 389 SUPERFAMILY RNA-binding domain, RBD 240 352 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01028 Rops-Chr11 14861034 14873410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01028 57 335 Eukaryotic Initiation Factors Gene Family AT2G23350 27.368 1.17e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01028 - - aprc:113864230 655.21