Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01015 ATGGAAAATTTCACCTCATCATCTTCTTCATCTTCCCCTCCTCCATCTCTGTCTCACATTCCACCCTTTTCAGCTTCATCGTCTTCTGCAGCTTTCGATGACTCTTATGAGGACTCTTGCAGTATATGTTTAGAGCCCTTCAGCATCGATGACCCATCCACTGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAATGGTCACAAAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCCGAAAAACGCTTAAGATCAAGAAACATATATTCATCTTCATTTGCACATTCTCGTATCCCCTTTGAACGGCTTAGTGATGACCATGATGATTCTTGCTCAGATGATTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGAAGAGCTCGTTTTGTTCACAGACAGGAAAGGCAGGGATCGTCTGGAGCAGGTCCATCAGAGGTTCTTGTGTTCAACTCTTCTGTGCATGTATCTGGGGTGCAACCAACACTTACAACTTCACCATCTTGGGGTAGTTCACCGTCTTCTGGTGTACCATCAACAGTTGACATTCAACCTCCAACATCTGCTTTTTCCCCTATAGTTGATGAGGTTGCAGGAAATGCTACTCATGAGACTGATGCCCCTTACATACCCAGAGTTCTCTTTAGCCAGCCACCACCTGAGAGTACAAGGCTATTAAACACTTCTGAGATGCTCTCTTTCCCTGAATCCATCAAATCCAAATTTTCAGCTGCTTCAGCCAGATATAGGGAATCAATTTCAAAAAGTACCCGTGGCCTTAAAGAGAAGTTACTTGCTCGTAATGCTGCAGTGAAAGAGTTAAGTAAAGGGGTTCAGCGTGAGATGAATGCAGGCATTGCTGGAGTTACACGGATGATTGAACGCCTTGATCTTAAAAGGTCCAATTCTCCTCTCATTCCTGTCCATACTGGGGGAACATCAGGCGTTCCTGGAGAAGGGAAGTCTGTTGAAGAGAATGGCATTGGGCATCCTCCTAGTGAGAAGAGTAGAGATGTAGTTCATGATCTTAGTTCAGACTCTCCCTCCCTTGTTTCTAGCATGGTTGCCGGTCGAATGGAAATTCCTCCAGGTGTTCAGAGTGGACAGATGCTGTGA 1191 0.4492 MENFTSSSSSSSPPPSLSHIPPFSASSSSAAFDDSYEDSCSICLEPFSIDDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLRSRNIYSSSFAHSRIPFERLSDDHDDSCSDDSDFDEQIMQHLVAAARRARFVHRQERQGSSGAGPSEVLVFNSSVHVSGVQPTLTTSPSWGSSPSSGVPSTVDIQPPTSAFSPIVDEVAGNATHETDAPYIPRVLFSQPPPESTRLLNTSEMLSFPESIKSKFSAASARYRESISKSTRGLKEKLLARNAAVKELSKGVQREMNAGIAGVTRMIERLDLKRSNSPLIPVHTGGTSGVPGEGKSVEENGIGHPPSEKSRDVVHDLSSDSPSLVSSMVAGRMEIPPGVQSGQML* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01015 396 MobiDBLite consensus disorder prediction 329 396 - -
Rops11g01015 396 MobiDBLite consensus disorder prediction 353 367 - -
Rops11g01015 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 111 IPR013083 -
Rops11g01015 396 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 89 - -
Rops11g01015 396 ProSiteProfiles Zinc finger RING-type profile. 40 80 IPR001841 -
Rops11g01015 396 SUPERFAMILY RING/U-box 36 87 - -
Rops11g01015 396 SMART ring_2 40 80 IPR001841 -
Rops11g01015 396 FunFam E3 ubiquitin-protein ligase RHF1A 25 92 - -
Rops11g01015 396 MobiDBLite consensus disorder prediction 1 28 - -
Rops11g01015 396 Pfam Ring finger domain 38 80 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01015 Rops-Chr11 14698272 14701760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01015 23 88 C3H Transcription Factor Family AT4G00335 40.909 7.37e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01015 K19043 - gmx:100785684 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01015 11 14698272 14701760 Rops11g01015 11 14698272 14701760 ECH