Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01010 ATGGATCAAAAGCAACATGGGCAACCAGGAGGAGGGAAAGATACTCCAGCACAAGCACATGGCACGAACCAAAATCAACCTAACCAAATGATTGCACCCACACACCCTATAACTCAGACAATTGGTACTGGTTCCTCATCATCCTATCCAAGAGAGCAACAATTTTCTCATCAATACATCCACCAGCTACAACAACAACAATTGCTGCAGCAACTCAATAACTTTTGGGCAAATCAGTTACAGGAAATTGAGGACATAACTGATTTTAGAAATCATAGCTTGCCTTTGGCCAGGATTAAGAAGATCATGAAAGCTGATGAAGATGTGAAGATGATATCAGCTGAGGCTCCTGTCCTCTTTGCTAAGGCTTGTGAAATGTTCATTATGGAGCTGACAATGAGGTCTTGGGTTAATGCAGAGGTGAATAAAAGGAGGACACTTCAGAAAAGTGACATAGCATCTGCAATCGCGAGGACTGATGTGTTTGATTTTTTAGTTGATGTTGTCCCAAGGGATGAAACAATGGATCATGAAGTATGTGTAGGCTTACCAAGAAGAGGCAATGCTCCAATTGAGAATGTTCCTTACTATTATATTCCACCTCAGCATGCTCAAGGTCCATCATATGTTGCTCCAACAGTGGTTATGGGAAGGCCTGTTCTTAATCAAGCTCATTATAGGCAACAACCCCATCCCCATGCAACTCAAGTGTGGCCAATCCCAAAAAAACAAAATCAATATCCAGGTTCAGATGATTGA 759 0.4177 MDQKQHGQPGGGKDTPAQAHGTNQNQPNQMIAPTHPITQTIGTGSSSSYPREQQFSHQYIHQLQQQQLLQQLNNFWANQLQEIEDITDFRNHSLPLARIKKIMKADEDVKMISAEAPVLFAKACEMFIMELTMRSWVNAEVNKRRTLQKSDIASAIARTDVFDFLVDVVPRDETMDHEVCVGLPRRGNAPIENVPYYYIPPQHAQGPSYVAPTVVMGRPVLNQAHYRQQPHPHATQVWPIPKKQNQYPGSDD* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01010 252 MobiDBLite consensus disorder prediction 17 53 - -
Rops11g01010 252 MobiDBLite consensus disorder prediction 1 53 - -
Rops11g01010 252 SUPERFAMILY Histone-fold 13 165 IPR009072 GO:0046982
Rops11g01010 252 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 50 190 - -
Rops11g01010 252 MobiDBLite consensus disorder prediction 228 252 - -
Rops11g01010 252 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 93 156 IPR003958 -
Rops11g01010 252 Gene3D Histone, subunit A 55 171 IPR009072 GO:0046982
Rops11g01010 252 FunFam Nuclear transcription factor Y subunit gamma 58 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01010 Rops-Chr11 14652207 14652965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01010 75 238 CCAAT-HAP5 Transcription Factor Family AT3G48590 58.788 4.36e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops11g01010 CBFD_NFYB_HMF 1.5e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01010 K08066 - jre:109010478 260.381